be to Allah
Thanks for your attention
On Tue, Aug 13, 2019 at 7:06 PM Greve, Douglas N.,Ph.D. <
dgr...@mgh.harvard.edu> wrote:
> I have not seen that error before. Have you checked the images to make
> sure there is nothing strange about them? Eg, some type of artifact?
>
> On 8/13/19
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Hello FreeSurfer Developers,
I'm attempting to run some of data with recon-all code, and after some
success run on several data, now I get the following error message even
when I run those data that ran well before:
nu_evaluate: crashed while running
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Hello Dear FreeSurfer Developers,
I'm attempting to run some of data with recon-all code, and after some
success run on several data, now I get the following error message even
when I run those data that ran well before:
nu_evaluate: crashed while
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They are sagital T1 mpr mri.
On Thursday, March 28, 2019, Z Hessam wrote:
> I get them from a mri center
>
> On Thursday, March 28, 2019, Bruce Fischl
wrote:
>> where did you get the dicoms?
>> On Thu, 28 Mar
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I get them from a mri center
On Thursday, March 28, 2019, Bruce Fischl
wrote:
> where did you get the dicoms?
> On Thu, 28 Mar 2019, Z Hessam wrote:
>
>>
>> External Email - Use Caution
>>
>> Soory , why
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Hello FreeSurfer Developers,
I,m attempting to convert my dicom files to *.mgz, with command line in
below:
$ recon-all -i /data/14ZOGOO/1.dcm -autorecon1 -subjid d14zogoo
but it exits with error and the recon-all.log file is attached.
why this error
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Hello FreeSurfer Team
i have problem when run a data set, i re-run it but that error remain (just
"convex hull" changed from 6148 to 6147!!)
this is the last line in terminal (that process doesn't exceed that after
about 10 hours!!!)
"CORRECTING
hello, i have problem again with a new data set.
this is the recon-all.log file in attach
thanks a lot
On Fri, Feb 9, 2018 at 2:22 PM, Z Hessam <z.hes...@gmail.com> wrote:
> thank you for your attention
>
> regards
>
> On Fri, Feb 9, 2018 at 1:04 AM, Bruce Fischl <fi
1) with a slice thickness of 9mm (we require all voxel
> dimensions to be <=1.5mm or so)
>
>
> cheers
> Bruce
>
>
>
> On Thu, 8 Feb 2018, Z Hessam wrote:
>
> sure...
>> with first code i convert *.dcm files.
>> with second code i want to segment
when i use first code for another data set, it sent me an error:
ERROR: /tmp/hessam91.tmp.decompressed.dcm.PV8Mal is not a dicom file
why this error happens?
On Thu, Feb 8, 2018 at 9:48 PM, Z Hessam <z.hes...@gmail.com> wrote:
> sure...
> with first code i convert *.dcm files.
&
Hello FreeSurfer develpers
I'm attempting to run " recon-all " command on a file of dicom data, and
encounter with an error command:
recon-all -s dyegmoh exited with ERRORS at Thu Feb 8 17:08:16 +0330 2018
how can i understand why this error happens and what should i do to solve
it?
thanks a lot for your help
best,
hessam
On Sun, Sep 24, 2017 at 6:51 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
> Hi Hessam
>
> yes, check the stats subdir for each subject (e.g. stats/aseg.stats)
>
> cheers
> Bruuce
> On Sun,
> 24 Sep 2017, Z Hessam wro
Hello FreeSurfer Developers,
I can't access numerical value of each volume after segmentation of MRI images.
how can i access that? does "freesurfer" produce such value for each segment?
Best,
Hessam
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Freesurfer mailing list
an recon-all, but the file was
> not properly written...
>
> On Aug 10, 2017, at 9:34 AM, Z Hessam <z.hes...@gmail.com> wrote:
>
> I copy the *.tar.gz file, and open and install the program by terminal. I
> am confused because that work last week for this data, but now, this
> doe
econ1 -subjid
fat_fh23" command to *.mgz, and then i use the "recon-all -s -all "
command in linux terminal.
On Thu, Aug 10, 2017 at 5:56 PM, Ruopeng Wang <rpw...@nmr.mgh.harvard.edu>
wrote:
> How did you put the data on your drive?
>
> On Aug 10, 2017, at 9:25 AM,
I didn't copy the file, and drive has 3.7GB free space
On Thu, Aug 10, 2017 at 5:41 PM, Ruopeng Wang <rpw...@nmr.mgh.harvard.edu>
wrote:
> Wait, the file size looks too small. Only 1590 bytes. Did the data get
> copied properly? Is your drive full?
>
> On Aug 10, 2017, at
/bert/mri/T1.mgz,
-1): read error
On Thu, Aug 10, 2017 at 5:19 PM, Ruopeng Wang <rpw...@nmr.mgh.harvard.edu>
wrote:
> What if you run:
>
> freeview -v /media/hessam91/driver2/freesurfer/freesurfer/
> subjects/bert/mri/T1.mgz
>
>
> On Aug 10, 2017, at 4:40 AM, Z Hessam
> subjects/bert/mri/T1.mgz
>
> what does it show?
>
> On Aug 9, 2017, at 4:47 PM, Z Hessam <z.hes...@gmail.com> wrote:
>
> of course:
>
> hessam@ubuntu:/media/hessam/driver2/freesurfer/subjects$ freeview -v
> bert/mri/T1.mgz bert/mri/wm.mgz bert/mri/brainma
/subjects/bert/mri/T1.mgz,
-1): read error
thanks a lot for your attention
On Wed, Aug 9, 2017 at 10:57 PM, Ruopeng Wang <rpw...@nmr.mgh.harvard.edu>
wrote:
> Can you copy and paste the exact command line you ran and the error
> message?
>
> Ruopeng
>
>
> On 08/09/2017 02:21
ischl <fis...@nmr.mgh.harvard.edu>
wrote:
> can you try it without all the \ characters? You shouldn't need them if
> it's all on one line
>
> On Wed, 9 Aug 2017, Z Hessam wrote:
>
>
>> $>freeview -v \bert/mri/T1.mgz \bert/mri/wm.mgz \
>> bert/
> hmmm, that looks ok, but it's hard to tell with all the backslashes and
> blank lines and such. Can you send the full command on a single line (e.g.
> by hitting up-arrow in the terminal window) and the actual output of
> freeview?
>
>
> On Wed, 9 Aug 2017, Z Hessam wrote:
>
gz and other existed files in GUI.
please help me to know why this error happend? and what should I do to
solve this?
I've searched the list, I found a similar errors, but wasn't helpful
answer reported.
help me please
regards
On Wed, Aug 9, 2017 at 7:56 PM, Z Hessam <z.hes...@gmail.com>
Hello Freesurfer Developers,
I have problem when I use "freeview" example code in terminal,
freeview
-v \
bert/mri/T1.mgz \
bert/mri/wm.mgz \
bert/mri/brainmask.mgz \
bert/mri/aseg.mgz:colormap=lut:opacity=0.2 \
-f \
bert/surf/lh.white:edgecolor=blue \
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