I try it without \ chars, works for some other subjects but it doesn't work for one of them,and now I can even open it with GUI, while I could open it before. It seems that is time variant! Should I run "recon-all ..." again for that subject?
On Wed, Aug 9, 2017 at 10:32 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > can you try it without all the \ characters? You shouldn't need them if > it's all on one line > > On Wed, 9 Aug 2017, Z Hessam wrote: > > >> $>freeview -v \ bert/mri/T1.mgz \ bert/mri/wm.mgz \ >> bert/mri/brainmask.mgz \ bert/mri/aseg.mgz:colormap=lut:opacity=0.2 >> mri_read(): couldn't determine type of file >> /media/hessam91/driver2/freesurfer/freesurfer/subjects/ >> MRIread failed: Unable to read from >> /media/hessam91/driver2/freesurfer/freesurfer/subjects/ >> mri_read(): couldn't determine type of file >> /media/hessam91/driver2/freesurfer/freesurfer/subjects/ >> >> >> I use the example 4 in the "download and install" page of site >> >> On Wed, Aug 9, 2017 at 8:44 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> wrote: >> >> hmmm, that looks ok, but it's hard to tell with all the >> backslashes and blank lines and such. Can you send the full >> command on a single line (e.g. by hitting up-arrow in the >> terminal window) and the actual output of freeview? >> >> On Wed, 9 Aug 2017, Z Hessam wrote: >> >> >> Hello Freesurfer Developers, >> >> I have problem when I use "freeview" example code in >> terminal, >> freeview -v \ >> >> bert/mri/T1.mgz \ >> >> bert/mri/wm.mgz \ >> >> bert/mri/brainmask.mgz \ >> >> >> bert/mri/aseg.mgz:colormap=lut:opacity=0.2 \ >> >> -f \ >> >> bert/surf/lh.white:edgecolor=blue \ >> >> bert/surf/lh.pial:edgecolor=red \ >> >> bert/surf/rh.white:edgecolor=blue \ >> >> bert/surf/rh.pial:edgecolor=red >> it tell "Failed to load MRI <subject_dir>", >> mri_read(): couldn't determine type of file >> <subject_dir> >> MRIread failed: Unable to read from <subject_dir> >> mri_read(): couldn't determine type of file >> <subject_dir> >> but i can load wm.mgz and other existed files in >> GUI. >> >> please help me to know why this error happend? and >> what should I do to solve >> this? >> >> I've searched the list, I found a similar errors, >> but wasn't helpful answer reported. >> help me please >> >> regards >> >> On Wed, Aug 9, 2017 at 7:56 PM, Z Hessam >> <z.hes...@gmail.com> wrote: >> >> Hello Freesurfer Developers, >> >> I have problem when I use "freeview" example code in >> terminal, >> freeview >> -v \ >> >> bert/mri/T1.mgz \ >> >> bert/mri/wm.mgz \ >> >> bert/mri/brainmask.mgz \ >> >> >> bert/mri/aseg.mgz:colormap=lut:opacity=0.2 \ >> >> -f \ >> >> bert/surf/lh.white:edgecolor=blue \ >> >> bert/surf/lh.pial:edgecolor=red \ >> >> bert/surf/rh.white:edgecolor=blue \ >> >> bert/surf/rh.pial:edgecolor=red >> it tell "Failed to load MRI <subject_dir>", but i >> can load wm.mgz and other existed files in GUI. >> >> please help me to know why this error happend? and >> what should I do to solve >> this? >> >> I've searched the list, I found a similar errors, >> but wasn't helpful answer reported. >> help me please >> >> regards >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom >> it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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