Dear experts,
when I run the qdec, and the wrong information appear in following:
qdec.bin: error while loading shared libraries: libXss.so.1: cannot open shared
object file: No such file or directory
I hope some experts to help me ,thank you very much!
--
Bo Xiang
State Key Laboratory
the subject with recon-all then give it the subject id. To
project a volumetric map onto the surface use mri_vol2surf, with the
registration typically computed by bbregister.
cheers
Bruce
On Mon, 17 Jun 2013, xiangbo_2010 wrote:
Hi dougThank you for giving this information, I used the
command
, xiangbo_2010
wrote:
I have obtained the mask from xjview (.img), I want to obtain the CT from
the mask, thanks!
Bo
At 2013-06-17 22:40:43,Bruce Fischl fis...@nmr.mgh.harvard.edu wrote:
what are you trying to map to the surface?
On Mon, 17 Jun 2013, xiangbo_2010
wrote:
Hi Bruce
is it in?
On Mon, 17 Jun 2013,
xiangbo_2010 wrote:
I want to get cortical thickness, and have finished the recon-all, and
obtained the mask from SPM which include the file with .img and .hdr,
whether I should convert the file (.img and .hdr) to file (.nii), and use
the command: bbregister --s bert
image
On Mon, 17 Jun 2013, xiangbo_2010
wrote:
I have obtained the mask from xjview (.img), I want to obtain the CT from
the mask, thanks!
Bo
At 2013-06-17 22:40:43,Bruce Fischl fis...@nmr.mgh.harvard.edu wrote:
what are you trying to map to the surface?
On Mon, 17 Jun 2013
At 2013-06-18 00:00:09,Bruce Fischl fis...@nmr.mgh.harvard.edu wrote:
and what subject do you wan to obtain thickness measures from? You could
use mri_vol2vol to map your mask to the individual using the MNI
transform
On Mon, 17 Jun 2013, xiangbo_2010 wrote:
the mask was obtained from xjview
I want to obtain the cortical thickness from a group of subjects, thanks!
At 2013-06-18 00:13:08,Bruce Fischl fis...@nmr.mgh.harvard.edu wrote:
are you trying to do this for a single subject or for a group of subjects
, or group average data?
On Tue, 18 Jun 2013, xiangbo_2010 wrote
Hi doug
Thank you for giving this information, I used the command: /tksurfer
fsaverage lh inflated -aparc -mni152reg -overlay
/pathname/to/spm/roi/yourfile.img/, but do not have results for me, and do not
know how to do next? thanks!
Bo
At 2013-06-06 23:04:30,Douglas N Greve
Dear experts,
I was wondering if anyone can advise on the best way to use an ROI mask created
in SPM (XjView) to extract cortical thickness values in freesurfer. Though
which was pointed out by reseachers, but I still can not know it. I hope some
experts help me, Thanks!
Bo
Thank you
, xiangbo_2010 wrote:
Dear experts,
I was wondering if anyone can advise on the best way to use an ROI mask created
in SPM (XjView) to extract cortical thickness values in freesurfer. Though
which was pointed out by reseachers, but I still can not know it. I hope some
experts help me, Thanks!
Bo
Dear experts
I want to analysis the asymmetry of surface area or thickness, what I do
next? thanks!
Bo Xiang___
Freesurfer mailing list
-BOM -APM -BPM00000
+AOM -BOM00 -AQM +BQM000
+AOM0 -APM000 -COM +CPM0! nbsp;nb sp;
+AOM000 -AQM -COM0 +CQM
On 11/17/12 9:21 PM, xiangbo_2010 wrote:
Hi Freesurfer experts,
I'm very sorry to bother you
Dear experts
Whether can the design of contrast in freesurfer 5.2 the same as SPM? it is
difficult to make the contrast in freesurfer if the categorical variables were
much more, specifically compute the interaction or F-test in study. Thanks！
Bo Xiang
--
+AOM -BOM -APM -BPM00000
+AOM -BOM00 -AQM +BQM000
+AOM0 -APM000 -COM +CPM0! nbsp;nb sp;
+AOM000 -AQM -COM0 +CQM
On 11/17/12 9:21 PM, xiangbo_2010 wrote:
Hi Freesurfer experts,
I'm very sorry
ROI to SPSS
日期： 周六, 1 月 5 日, 2013 年 02:42
Hi Bo, you need to make sure that you have exactly the same design
matrix in SPSS. The design matrix for qdec is Xg.dat in the output
directory. How did you extract the data out of the ROIs?
doug
On 01/02/2013 11:46 PM, xiangbo_2010 wrote
Dear Freesurfer Experts,
I would like the mean surface area measures of each cluster i found using
command line (mri_glmfit). I used mri_glmfit for a group comparison in surface
area between a patient group and a healthy control group. I found 4 different
significant clusters (using FDR
发送自我的HTC One SU
- Forwarded message -
发件人： xiangbo_2010 xiangbo_2...@126.com
收件人： MCLAREN, Donald mclaren.don...@gmail.com
抄送： freesurfer@nmr.mgh.harvard.edu
主题： [Freesurfer] contrast matrix
日期： 周二, 12 月 11 日, 2012 年 20:08
Dear experts
I had obtained a ROI through the interaction
07:38 PM, xiangbo_2...@126.com wrote:
I used the command:
mri_segstats --i y.mgh --slabel fsaverage lh yourlabel.label --avgwf
avg.dat --id 1. Thanks!
Bo Xiang
送自我的HTC One SU
- Reply message -
发件人： Douglas N Greve gr...@nmr.mgh.harvard.edu
收件人： xiangbo_2010 xiangbo_2...@126
the values in the avg.dat file? Why do you think they are
volume? In any event, they have the same interpretation as the values in y.mgh
On 1/8/13 8:43 PM, xiangbo_2010 wrote:
Dear doug
I used the command: mri_segstats --i y.mgh --slabel fsaverage lh
yourlabel.label --avgwf avg.dat --id 1
日期： 周六, 1 月 5 日, 2013 年 02:42
Hi Bo, you need to make sure that you have exactly the same design
matrix in SPSS. The design matrix for qdec is Xg.dat in the output
directory. How did you extract the data out of the ROIs?
doug
On 01/02/2013 11:46 PM, xiangbo_2010 wrote
Dear experts
I has obtained the ROI by analysis, I want to obtain the label of this ROI,
whether has the command to direct keep label, not drawing this ROI? thanks!
Bo Xiang___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
to register your dti with the anatomical
(bbregister), then run mri_segstats using the registration matrix and the FA
volume.
doug
On 12/16/12 12:32 AM, xiangbo_2010 wrote:
Dear experts
I had obtained the ROI label from Freesurfer, the following I want to obtain
the FA value from DTI
your dti with the anatomical
(bbregister), then run mri_segstats using the registration matrix and the FA
volume.
doug
On 12/16/12 12:32 AM, xiangbo_2010 wrote:
Dear experts
I had obtained the ROI label from Freesurfer, the following I want to obtain
the FA value from DTI in this ROI, what
Dear experts
I had obtained the ROI label from Freesurfer, the following I want to obtain
the FA value from DTI in this ROI, what should I do? Thanks!
Bo Xiang___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
between four variables (factor
1, factor 2, gender, and age)?
doug
On 11/21/2012 10:49 AM, xiangbo_2010 wrote:
Dear Donald McLaren
Thank you for your reply! I make the contrast according to your method
is following，but I want to make interaction between factor 1 (A,B)and
factor 2(C,D,E
+AOM0 -APM000 -COM +CPM0
+AOM000 -AQM -COM0 +CQM
On 11/17/12 9:21 PM, xiangbo_2010 wrote:
Hi Freesurfer experts,
I'm very sorry to bother you, but I am very
Dear experts:
I want to ask the question: the gender (1;2) can be as a continuous
variable? I hope that have experts to help me. Thanks!
Bo Xiang
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
, xiangbo_2010 wrote:
Dear experts:
I want to ask the question: the gender (1;2) can be as a
continuous variable? I hope that have experts to help me. Thanks!
Bo Xiang
The information in this e-mail is intended only for the person to whom it is
addressed. If you
Hi Freesurfer experts,
I'm very sorry to bother you, but I am very confused with the following
questions:
My experimental design includes three discrete factors: factor 1 with three
levels (A,B,C ); factor 2 with three levels (O,P,Q); gender (F, M), and one
covariate.
So I can get 18
in the matrix? Secondly,
since the interaction you are interested in have a df of 4, do you think maybe
you should have 4 rows rather than 8 in your matrix?
Cherry
On Sat, Nov 17, 2012 at 9:21 PM, xiangbo_2010 xiangbo_2...@126.com wrote:
Hi Freesurfer experts,
I'm very sorry to bother you, but I am
Dear experts:
I used the
http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Visualization?highlight=%28ROI%29
to defining a region of interest, but when I make a series of left clicks on
the surface， then click the Make Closed Fill Boundary icon in the tools
window. howevre,
Hi Freesurfer experts,
I'm very sorry to bother you, but I am very confused with the following
questions:
My experimental design includes three discrete factors: factor 1 with three
levels (A,B,C ); factor 2 with three levels (O,P,Q); gender (F, M), and one
covariate.
So I can get 18
Hi Freesurfer experts,
I'm very sorry to bother you, but I am very confused with the following
questions:
My experimental design includes two discrete factors: genotype with three
levels (GG,GA,AA ); gender (F, M), and one covariate.
So I can get 6 classes: MGG, MGA,MAA, FGG,FGA,FAA.
1) I
Hi Freesurfer experts,
I'm very sorry to bother you, but I am very confused with the following
questions:
My experimental design includes two discrete factors: genotype with three
levels (GG,GA,AA ); gender (F, M), and one covariate.
So I can get 6 classes: MGG, MGA,MAA, FGG,FGA,FAA.
1)
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