[Freesurfer] Editing labels - How to get the altered structures volumes?

2009-09-15 Thread Amorim, Edilberto
Dear freesurfers, Foremost, I want to thank all the fellows freesurfeers that help us out in the mailing list. This is an amazing support. I'm a beginner working with FreeSurfer - your help is very appreciated. I've also searched in the e-mail list archives, but did not find the answer to my

Re: [Freesurfer] Editing labels - How to get the altered structures volumes?

2009-09-15 Thread Douglas N Greve
Easiest to save the annotation under a different name, then run mris_anatomical_stats -mgz -f stats/lh.new.aparc.stats -b -a label/lh.new.aparc.annot subjectname doug Amorim, Edilberto wrote: Dear freesurfers, Foremost, I want to thank all the fellows freesurfeers that help us out in

[Freesurfer] editing labels

2007-08-06 Thread Sarah J Greene
Hi all, I just wanted to ask about editing labels in tksurfer. I have converted my annot files to labels using mri_annotation2label, and now have all of the labels in the label directory. However when I edit the labels, and then save them using save selected label (highlighting the label and

Re: [Freesurfer] editing labels

2007-08-06 Thread Kevin Teich
Hi Sarah, When you save the label, is there any output on the shell? Can you load and edit a single label, save it out, exit tksurfer, restart it, and load the label in again, with the changes you made present in the label? On Mon, 2007-08-06 at 14:09 -0400, Sarah J Greene wrote: Hi all,

RE: [Freesurfer] Editing labels

2005-08-15 Thread Fornito, Alexander
to label... -Original Message- From: Kevin Teich [mailto:[EMAIL PROTECTED] Sent: Fri 8/12/2005 7:56 AM To: Fornito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject:RE: [Freesurfer] Editing labels The internal representation of the label format is treated differently

Re: [Freesurfer] Editing labels

2005-08-10 Thread Kevin Teich
I've been trying to edit some labels in tkmedit and have noticed that if I save a label in tkmedit and then project it back onto the surface in tksurfer, it appears fragmented (ie., speckled). This happens even if I save a label that was created in tksurfer in tkmedit without even editing it

RE: [Freesurfer] Editing labels

2005-08-10 Thread Fornito, Alexander
the surface (?). -Original Message- From: Kevin Teich [mailto:[EMAIL PROTECTED] Sent: Thu 8/11/2005 5:18 AM To: Fornito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject:Re: [Freesurfer] Editing labels I've been trying to edit some labels in tkmedit and have noticed

[Freesurfer] Editing labels

2005-08-06 Thread Fornito, Alexander
Hi, I've been trying to edit some labels in tkmedit and have noticed that if I save a label in tkmedit and then project it back onto the surface in tksurfer, it appears fragmented (ie., speckled). This happens even if I save a label that was created in tksurfer in tkmedit without even editing