Yeah, I think I misunderstood what was happening with the ico registration. I
thought it was using the ico to downsample the subject surface, but I see that
this is an atlas space and I can do w/e calculations I need I this space and
then register back to subject space after.
Thanks for the
I don't understand what you mean. When you use ico (when it used to
work), it always went to fsaverage space. Do you want to decimate the
native space surfaces?
On 09/29/2016 10:15 AM, Jared P Zimmerman wrote:
> I want to project to the native subject surfaces though, not
> fsaverage. If I
to achieve my goal of
>> projecting to subject surfaces, smoothing and
>> downsampling to FS4, as well as
>> recommendations on how to visualize the
>> surface functional data and confirm that the
>> projections has worked properly would
quot;Jared Zimmerman"
<jar...@mail.med.upenn.edu>
To: freesurfer@nmr.mgh.harvard.edu
Sent: Monday, September 19, 2016 8:46:17 PM
Subject: [Freesurfer] Projecting processed 4D
functional data to individual surfaces
Hi All,
I'm trying to project som
jID --trgsurfval
>>>> /mov_dir/filtered_func_residuals_fs4_lh_6mm_noreshape.mgh --hemi lh
>>>> --trgicoorder 4
>>>>
>>>> Any advice on how to achieve my goal of projecting to subject surfaces,
>>>> smoothing and downsampling to FS4,
you can actually skip the ico thing and just use --trgsubject fsaverage6
On 9/28/16 7:06 PM, Jared P Zimmerman wrote:
Thanks Doug,
This does seem like it will do the right thing, but it’s failing
because it’s looking for /SUBJECTS_DIR/ico/ and I do not seem to have
an ico subject in my
>
> - Forwarded Message -
> From: "Jared Zimmerman" <jar...@mail.med.upenn.edu>
> To: freesurfer@nmr.mgh.harvard.edu
> Sent: Monday, September 19, 2016 8:46:17 PM
> Subject: [Freesurfer] Projecting processed 4D functional data to individual
> surfaces
>
> Hi All,
?
Thank you,
Jared
- Forwarded Message -
From: "Jared Zimmerman" <jar...@mail.med.upenn.edu>
To: freesurfer@nmr.mgh.harvard.edu
Sent: Monday, September 19, 2016 8:46:17 PM
Subject: [Freesurfer] Projecting processed 4D functional data to individual
surfaces
Hi All,
I'm t
Hi All,
I'm trying to project some processed resting-state data onto the surface to run
some surface based parcellations, and I'm running into a bit of difficulty.
Basically I'm using bbregister to register my functional to the T1, then
mri_vol2surf to project to the surface with the
