Re: [Freesurfer] mri_convert WARNING: files are not found to be different and cannot be sorted

When FS reads a series of dicom files, it tries to sort them in time and space so that it can generate the appropriate 4D volume. To do this, it needs to get info out of the DICOM header to determine this sorting. This includes image number and geometry information. If that information is not

[Freesurfer] mri_convert WARNING: files are not found to be different and cannot be sorted

Hello all, I have run mri_convert on a series of dicoms and received the following error for several of my images. As with the previous bug report for this I have run mri_info on my dicom series and it’s output is below. My main concern is since these dicoms are being jumbled up and I am not

[Freesurfer] mri_convert WARNING: files are not found to be different and cannot be sorted and cannot fit in 256^3 mm^3 volume.

Dear FreeSurfers, I have imported several dicom files with recon-all -i -subjid id. All files were imported correctly, apart from one subjects. When I try to convert it direcelty with mri_convert -ot mgz dicom//1.dcm -s I get this error message. WARNING: files are not found to be

Re: [Freesurfer] mri_convert WARNING: files are not found to be different and cannot be sorted and cannot fit in 256^3 mm^3 volume.

Cut-and-paste the following info into your FreeSurfer problem report: - FREESURFER_HOME: /usr/local/freesurfer Build stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 Debian version: jessie/sid Kernel info: Linux

Re: [Freesurfer] mri_convert WARNING: files are not found to be different and cannot be sorted and cannot fit in 256^3 mm^3 volume.

Hi Knut can you run mri_info on that dicom file? thanks Bruce On Sat, 5 Jul 2014, Knut J Bjuland wrote: Cut-and-paste the following info into your FreeSurfer problem report: - FREESURFER_HOME: /usr/local/freesurfer Build

Re: [Freesurfer] mri_convert WARNING: files are not found to be different and cannot be sorted and cannot fit in 256^3 mm^3 volume.

Hi Knut is the FOV really 384mm?? That's awfully big and seems more likely to be an error in the dicoms than real. cheers Bruce On Sat, 5 Jul 2014, Knut J Bjuland wrote: Dear FreeSurfers, I have imported several dicom files with recon-all -i -subjid id. All files were imported correctly,

Re: [Freesurfer] mri_convert WARNING: files are not found to be different and cannot be sorted and cannot fit in 256^3 mm^3 volume.

Hi Bruce mri_info The output is as following. Please tell me if you need the dicom. Thank you for your attention. Knut J mri_info /home/freesurfer/subjects/dicom//1.dcm INFO: Found 324 files in /home/freesurfer/subjects/dicom/ INFO: Scanning for Series Number 17 INFO: found 320 files in

Re: [Freesurfer] mri_convert WARNING: files are not found to be different and cannot be sorted and cannot fit in 256^3 mm^3 volume.

Hi Bruce That right. After the dicom were converted to nii.gz it imported and processed into recon-all without any problem. Please see my other mail with mri_info. mri_convert /home/freesurfer/subjects//mri/rawavg.mgz /home/freesurfer/subjects//mri/orig.mgz --conform $Id: