Re: [Freesurfer] mri_segment error

This one has 9mm thick slices. This web page: https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferBeginnersGuide has some discussion about what types of inputs are needed. cheers Bruce On Mon, 19 Mar 2018, Z Hessam wrote: hello, i have problem again with a new data set. this is the

Re: [Freesurfer] mri_segment error

Your input here is a localizer image: Protocol t2_haste_localizer_p2 On Mon, Mar 19, 2018 at 12:51 PM, Z Hessam wrote: > > hello, i have problem again with a new data set. > this is the recon-all.log file in attach > > thanks a lot > > > On Fri, Feb 9, 2018 at

Re: [Freesurfer] mri_segment error

hello, i have problem again with a new data set. this is the recon-all.log file in attach thanks a lot On Fri, Feb 9, 2018 at 2:22 PM, Z Hessam wrote: > thank you for your attention > > regards > > On Fri, Feb 9, 2018 at 1:04 AM, Bruce Fischl >

Re: [Freesurfer] mri_segment error

thank you for your attention regards On Fri, Feb 9, 2018 at 1:04 AM, Bruce Fischl wrote: > looks like the acquisition is not what you would need to run FreeSurfer > on. Looking at the log I think your input is a T2-weighted image (we > require a T1) with a slice

Re: [Freesurfer] mri_segment error

looks like the acquisition is not what you would need to run FreeSurfer on. Looking at the log I think your input is a T2-weighted image (we require a T1) with a slice thickness of 9mm (we require all voxel dimensions to be <=1.5mm or so) cheers Bruce On Thu, 8 Feb 2018, Z Hessam wrote:

Re: [Freesurfer] mri_segment error

when i use first code for another data set, it sent me an error: ERROR: /tmp/hessam91.tmp.decompressed.dcm.PV8Mal is not a dicom file why this error happens? On Thu, Feb 8, 2018 at 9:48 PM, Z Hessam wrote: > sure... > with first code i convert *.dcm files. > with second

Re: [Freesurfer] mri_segment error

can you send us the complete command you ran, the entire screen output and the recon-all.log file? cheers Bruce On Thu, 8 Feb 2018, Z Hessam wrote: Hello FreeSurfer develpers I'm attempting to run " recon-all " command on a file of dicom data, and encounter with an error command: recon-all

[Freesurfer] mri_segment error

Hello FreeSurfer develpers I'm attempting to run " recon-all " command on a file of dicom data, and encounter with an error command: recon-all -s dyegmoh exited with ERRORS at Thu Feb 8 17:08:16 +0330 2018 how can i understand why this error happens and what should i do to solve it?