Hi,
I have been trying to use trackster on the main Galaxy server for a couple
of days now. It was working fine for me early yesterday, I was looking at
(larger) BAM files, then it just stopped and would not display the data of
the loaded tracks (but did display the track title). I have tried to
Hello,
I keep on getting this error today: Error executing tool: [Errno 13]
Permission denied: '/galaxy/main_pool/pool4/files/004' .
What is wrong?
Thank you!
Phil
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Hi there,
I received the following error when trying to download/save my tabular
files with 5k lines:
Server Error
An error occurred. See the error logs for more information. (Turn debug on
to display exception reports here)
Please help!
Thanks in advance.
Cheers,
Rathi
--
Rathi
Mo,
This was a temporary problem and has been fixed.
However, the datasets you tried to visualize are now in an error state, so
you'll have to copy them (History Menu -- Copy Datasets) to create new ones,
which you can then visualize. You can copy datasets to the same history without
Hi Jeremy,
I was able to reproduce the error on the public Galaxy server. I shared the
history with you (jeremy.goe...@emory.edu). It's named export history to file
bug.
Thanks.
Sarah
- Original Message -
From: Sarah Diehl di...@immunbio.mpg.de
To: Jeremy Goecks
On May 9, 2012, at 10:37 AM, Tilahun Abebe wrote:
Hi Jen,
Thank you for the suggestions. I did try to log in to Galaxy under User
--Login. The password is the one I use for the Galaxy Main. However, it
gives me the error message No such user (please note that login is case
sensitive). I
On May 3, 2012, at 3:42 PM, Dorset, Daniel C wrote:
I have had Galaxy running on a local BAS, and after success with that we’re
ready to create an instance on our local cluster computing service. The local
cluster uses PBS/Torque.
I’m familiar with the basics of configuration, but our
On May 10, 2012, at 11:02 AM, Nate Coraor wrote:
On May 3, 2012, at 3:42 PM, Dorset, Daniel C wrote:
I have had Galaxy running on a local BAS, and after success with that we’re
ready to create an instance on our local cluster computing service. The
local cluster uses PBS/Torque.
I’m
Thanks Nate! I'm looking forward to it!
-Original Message-
From: Nate Coraor [mailto:n...@bx.psu.edu]
Sent: Thursday, May 10, 2012 11:02 AM
To: Dorset, Daniel C
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Running Galaxy on PBS/Torque cluster
On May 3, 2012, at 3:42 PM,
Fixed in galaxy-central changeset cc70c3dcd6f7
Sarah, thanks for taking the time to reproduce on the public server.
Best,
J.
On May 10, 2012, at 10:17 AM, Sarah Diehl wrote:
Hi Jeremy,
I was able to reproduce the error on the public Galaxy server. I shared the
history with you
Hi Fred,
Thanks for the tip on the alignseq file. It did work (I do now have
sequence that came back from the tool, will have to check if it correct).
Anyone have a logical explanation?
Perhaps these myriad loc files can be streamlined down to something simple
in future.
Thanks.
Dan: The
Hi,
I agree that *.loc files should be consolidated or, at least, we should
have proper documentation about which loc file is required for each tool...
Took me quite some time to find that solution.
I would suggest can we have a open wiki where these things are
annotated. ie: if I find a
RE: The chat about NZ/AUS communication us here at Otago University
(Dunedin, NZ) are very very keen for this.
Please email us at edward.hi...@otago.ac.nz if this does decide to take off :)
Cheers,
Ed
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Clare,
I'm running an AWS Cloudman instance (on US East region) from Sydney for a
developing suite of proteomics PTM tools in Perl, for use mainly by
http://sydney.edu.au/science/molecular_bioscience/ and
http://www.sdu.dk/en/om_sdu/institutter_centre/bmb_biokemi_og_molekylaer_biologi
Hard to
Hi all,
I would just like to ask if it's possible to create a new folder (via
script) in the galaxy-dist folder.
Cheers,
CL
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