Thanks Jeremy
I've given up on that approach to nested workflows - too inefficient,
too fragile. If I have lots of time (and a grad student to help out)
I've got some ideas about having a deep look at the tool runner side of
Galaxy with an eye to efficiently implementing the mapping of input data
Hi all,
currently I face some strange behaviour of the tool panel in Galaxy if I
add top-level label tags to the tool_conf.xml. The problem is that the
labels stay forever, even if I remove them again from the tool_conf.xml
and they also appear three section earlier than where I put them.
I
Thank you Jeremy,
you answered partially. I would like insert a command, to launch my script,
in the script or in the xml files of my tools to force it to change the
extension of output files.
But it seems impossible because my command perl after the command of tool's
script doesn't work
Hello Sarah,
This section of the Galaxy tool shed wiki should provide the information you
need. Let me know if you bump into any additional questions.
http://wiki.g2.bx.psu.edu/Tool%20Shed#Managing_the_layout_of_your_Galaxy_tool_panel
Thanks!
Greg Von Kuster
On May 24, 2012, at 8:15 AM,
On Thu, May 24, 2012 at 1:54 PM, Jeremy Goecks jeremy.goe...@emory.edu wrote:
Julie wrote:
Thank you Jeremy,
you answered partially. I would like insert a command, to launch my script,
in the script or in the xml files of my tools to force it to change the
extension
of output files. But it
On May 23, 2012, at 11:42 PM, Ciara Ledero wrote:
I didn't know that. Thanks for the reply! Now I have a new set of questions.
First, how do I list myself as an admin? Should I just literally add my login
detail in the config file? Second, my colleague would like to be able to edit
and
Thanks for pointing that out. I missed that there's now a seperate file
to organize everything.
However, it still seems to have some problems when installing tools from
the shed. I just replaced some of my old manual installations of tools
with an automatic installation from the shed, but
Hi all,
I have a similar, maybe related problem. I'm running a configuration as
described at
http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Web%20Application%20Scaling.
I have three webservers, one manager and two handlers. Everything is
behind an Apache and the rewrite rules are set
On Thu, May 24, 2012 at 3:27 PM, julie dubois dubju...@gmail.com wrote:
Ok I've tried to add my script perl in the command line with semi-colon.
It's work
But this script sets in entry the variable $wigoutput of my file xml. But
when I show it, it's not what I want; It's just the value : 1 .
Glad it helped.
About configuring Galaxy to use port 8080, other than what you are
already doing, checking for another process already using the port, I
wouldn't know what to recommend.
About the balancing configuration, I haven't done it, so I don't have
much to help with that. I do think it
Hi Ann,
This code has been to added to the queue of items to be folded into the
main release. A developer will be in touch if and when they have questions.
Thanks for submitting this.
Dave C.
On Wed, May 23, 2012 at 9:14 AM, Ann Black-Ziegelbein
annbl...@eng.uiowa.edu wrote:
Hi -
We have
Okay, we'll do that! Thanks for the help.
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Hi,
I've created a few workflows and have been having issues with some steps
randomly failing. This would not be an issue if I could simply resume the
workflow from the failed step, but it seems that this is not possible. Instead,
I'm forced to restart the workflow from the beginning. Is
Hello,
There is an option of FTP upload on public galaxy, but my local galaxy
lacks this capability.
Is there a way to configure FTP upload for local galaxy?
thanks,
Sergei
--
Sergei (Siarhei Manakou) Manakov
California Institute of Technology
+1 626 395 3593
Hello,
Please see the section titled 'Setup for Local Instances' section on this page
to read about how to get .len files for various builds.
Best,
J.
On May 24, 2012, at 10:24 PM, Xu, Jianpeng wrote:
Hi,
I am trying to install the Trackster on the local galaxy. I read the webpage
Hello,
Details for setting up FTP locally can be found here:
http://wiki.g2.bx.psu.edu/Admin/Config/Upload%20via%20FTP
Best,
J.
On May 24, 2012, at 10:41 PM, Sergei Manakov wrote:
Hello,
There is an option of FTP upload on public galaxy, but my local galaxy lacks
this capability.
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