Re: [galaxy-dev] Upload local files

Yes, we'd like to do this as well. Our users data are all on the servers, not on their Windows PCs and requiring the admin create shared data libraries is an overhead we'd rather avoid. Thanx, Russell Smithies Infrastructure Technician T 03 489 9085 M 027 4734 600 E russell.smith...@agresearch.c

[galaxy-dev] PBS Server Throwing Errors

Hi, Galaxy Community, Greetings from The University of Chicago; I hope all who attended the Galaxy conference enjoyed it as much as I did. I have searched the mailing list archives as well as Google to a resolve problem I am seeing, however I am somewhat at a loss as to the next course of action

Re: [galaxy-dev] bcftools

Hello HK, This tool and the others related to VCF format that are on Test only or on Main as "beta" are currently under development. Thank you for your patience while we catch up on replies, last week was very busy for our team (GCC 2012), Jen Galaxy team On 7/24/12 7:23 AM, Hongkyun Kim w

Re: [galaxy-dev] GFF tools

> When I use one of GFF tool ( > Filter GFF data by attribute using simple expressions OR > Filter GFF data by feature count using simple expressions OR > Filter GTF data by attribute values_list) > , I have this message : > Traceback (most recent call last): > File > "/usr/local/bioinfo/src/gal

[galaxy-dev] Odd (possible latency/race?) problems post-upgrade

I'm seeing a possible latency issue or race condition when starting Galaxy after the latest hg upgrade (July 20) from galaxy-dist; the prior upgrade doesn't have this problem. We have small setup with one job manager/runner and two web front-ends for testing load balancing: …from universe_wsgi

Re: [galaxy-dev] Old tool not showing up properly in Tool Shed

On Mon, Jul 30, 2012 at 4:32 PM, Greg Von Kuster wrote: > Hi Peter, > > This issue is part of a larger known issue that I have not had time to > resolve due to preparation for the 2 consecutive recent conferences > I've been involved in. This is my next chunk of though, and I'll let you > know wh

Re: [galaxy-dev] Old tool not showing up properly in Tool Shed

Hi Peter, This issue is part of a larger known issue that I have not had time to resolve due to preparation for the 2 consecutive recent conferences I've been involved in. This is my next chunk of though, and I'll let you know when I get it finished. In the meantime, even though the WoLF PSOR

[galaxy-dev] Old tool not showing up properly in Tool Shed

Hi all, I've just uploaded an update to my (previously protein only) sequence analysis bundle on the ToolShed, which is stuck with the original name: tmhmm_and_signalp This now offers Galaxy wrappers for several standalone command line sequence analysis tools: * SignalP 3.0 predicts signal pepti

[galaxy-dev] Upload local files

Hi devs,   when using the upload tool it would be nice to let the user specify paths to files stored on our internal servers like the admin can when choosing to add data to a library. Also it would be nice to be able to link to these files.   Unfortunately I was not able to find the "tool" f

[galaxy-dev] GFF tools

Hello, When I use one of GFF tool ( Filter GFF data by attribute using simple expressions OR Filter GFF data by feature count