Dear list,
I thought I was working with fairly large datasets, but they have
recently started to include ~2Gb files in sets of 50. I have ran these
sort of things before as merged data by using tar to roll them up in one
set, but when dealing with 100Gb tarfiles, Galaxy on EC2 seems to get
Hello,
We added batch gfPcr as a tool in galaxy by writing a wrapper. We wrote
another tool in python to modify the output of this tool (we increment the
starts of the intervals by 1 to make the starting intervals 1 based) and
wrote a wrapper for this other tool. Is is possible to couple these
On Fri, Sep 28, 2012 at 11:28 PM, Robert Chase
re...@channing.harvard.edu wrote:
Hello,
We added batch gfPcr as a tool in galaxy by writing a wrapper. We wrote
another tool in python to modify the output of this tool (we increment the
starts of the intervals by 1 to make the starting
On Sep 10, 2012, at 6:29 PM, Julian Pradinuk wrote:
Hi all,
Could someone please point me to helpful ressources for installing HYPHY in
Galaxy?
• I've downloaded, compiled and installed HyPhy
• I've copied the contents of the installation folder to
On Sep 11, 2012, at 5:01 AM, Joachim Jacob wrote:
Hi all,
I wonder if somebody with experience could enlighten me on these issues
regarding authentication of users.
- is it possible to have LDAP integration simultaneously with local Galaxy
users. What I want to reach is when LDAP
On Sep 11, 2012, at 12:09 PM, Fenglou Mao wrote:
Galaxy imported a library which already existed in the python system folder.
See the error message below.
/home/x/work/galaxy-dist/lib/galaxy/__init__.py:79: UserWarning: Module
markupsafe was already imported from
On Sep 20, 2012, at 7:55 AM, Derrick Lin wrote:
Hi Nate,
We downloaded the entire indexes repos and our guys are planning to write a
script to generate loc files based on the given path to the repos.
We are wondering if the galaxy team will release the loc files that are being
used in
Hi Derrick,
If you're using Postgres, it's now possible to clean these up using
galaxy-dist/scripts/cleanup_datasets/pgcleanup.py
--nate
On Sep 13, 2012, at 11:55 PM, Derrick Lin wrote:
Thanks Jeremy,
I am sure it's trivial for us to do a manual clean up
Cheers,
D
On Fri, Sep 14,
Hi Josh,
Are you using XSendFile or X-Accel-Redirect, by any chance?
--nate
On Sep 17, 2012, at 5:18 PM, Josh Nielsen wrote:
Okay, I solved half of the problem. The upload job was consistently being
submitted to the one compute node in our cluster that I forgot to create the
symlink on
On Sep 18, 2012, at 11:56 AM, Joseph Hargitai wrote:
Hi,
General:
Is there a quantifiable difference in data uploads, speed of processing,
general availability after the connection was/is established to Pittsburgh?
Hi Joe,
I haven't tested it within the front end of Galaxy to see whether
Hello all,
The October 2012 Galaxy Update is now
availablehttp://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_10
:**
-
Upcoming Events and
Deadlineshttp://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_10#Upcoming_Events_and_Deadlines
-
35 new
Sorry Nate,
We are using MySQL so cannot verify this. We are happy to try once the
MySQL alternative's released.
Regards,
Derrick
On Tue, Oct 2, 2012 at 2:16 AM, Nate Coraor n...@bx.psu.edu wrote:
Hi Derrick,
If you're using Postgres, it's now possible to clean these up using
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