[galaxy-dev] Login issue with apache proxy

2013-03-15 Thread Lionel SPINELLI
Hello all, I recently installed a galaxy server in my lab with Apache proxy and load balancing. Just after the installation, I was able to login correctly and everything seemed to work fine. The day after, login issues appeared. Login from the login page is not possible while login from other

Re: [galaxy-dev] Conditional tool options based on input file format?

2013-03-15 Thread Björn Grüning
Hi Peter, I've looked over the wiki and as far as I can see, 'when' tags used inside 'conditional' tags only work on another input variable's values. I would like to be able to do is a conditional based on the file format of an input file. For instance, a tool might take XML or tabular

Re: [galaxy-dev] Conditional tool options based on input file format?

2013-03-15 Thread John Chilton
Hey Peter, I wonder if it is better to ask the user what type they would like to select and then have the input param inside the conditional. My concern about you approach is who it would interplay with workflows. Say you build a workflow that processes XML files with one input, say an XML file.

Re: [galaxy-dev] Conditional tool options based on input file format?

2013-03-15 Thread Peter Cock
On Fri, Mar 15, 2013 at 2:51 PM, John Chilton chil...@msi.umn.edu wrote: Hey Peter, I wonder if it is better to ask the user what type they would like to select and then have the input param inside the conditional. That is doable now, but I'm not sure it is optimal for usability. My

Re: [galaxy-dev] hg push to remote tool shed fails with abort: authorization failed

2013-03-15 Thread Dave Bouvier
Jorrit, Thank you for reporting this issue, I've committed a fix in the default branch at 9077:62bd6fe0e9aa, and it will be updated in stable at our next release. --Dave B. On 3/13/13 18:11:27.000, jorrit poelen wrote: To add some information to my earlier post - It seems that the

[galaxy-dev] configure loacl galaxy cluster question!

2013-03-15 Thread Hakeem Almabrazi
I have followed the instructions on how to setup a local cluster closely (http://wiki.galaxyproject.org/Admin/Config/Performance/Cluster). Frankly, the (Galaxy Configuration) section was not clear for me. I am not sure if those outlined steps should be applied to the server's

Re: [galaxy-dev] workflow parameters

2013-03-15 Thread Daniel Blankenberg
Hi Brad, Thanks for reporting this issue. It has been fixed in -central and will be available in the next stable release: https://bitbucket.org/galaxy/galaxy-central/commits/b9afd514145740b4d5999158d51bd7dc4a409a99 Thanks for using Galaxy, Dan On Mar 15, 2013, at 5:04 PM, Langhorst, Brad

Re: [galaxy-dev] hg push to remote tool shed fails with abort: authorization failed

2013-03-15 Thread jorrit poelen
Thanks Dave for your super-quick response! Works like a charm. -jorrit On Mar 15, 2013, at 12:16 PM, Dave Bouvier wrote: Jorrit, Thank you for reporting this issue, I've committed a fix in the default branch at 9077:62bd6fe0e9aa, and it will be updated in stable at our next release.

Re: [galaxy-dev] workflow parameters

2013-03-15 Thread Langhorst, Brad
Hi Dan: I've transplanted that fix - looks good in workflow editing. When i try to run the workflow though, I get this stack trace: URL: http://galaxy.neb.com/workflow/run?id=b3c161103f7e2a00 File '/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py',