HI Jennifer,
Thanks for the kind email reply. I think what you wrote pull from central
individual changesets as desired should be the way that I like to try out.
The question is do you know the patch name for the nglims? Or I need to talk to
the nglims developers as you mentioned in your
On Tue, Aug 27, 2013 at 2:18 PM, Dave Bouvier d...@bx.psu.edu wrote:
Peter,
I also tried running the command that returns error code 64 on the same
system that runs the automated tests, and it downloaded the correct file for
that operating system and architecture. So I'm not sure why it's
On Wed, Sep 18, 2013 at 2:24 AM, Guest, Simon
simon.gu...@agresearch.co.nz wrote:
Hi Bjoern,
I can see man years of effort being spent on solving this problem within
Galaxy. I was going to title this email Danger, Will Robinson, but I didn't
want to be disrespectful. I think the path being
Hi Team,
Has anyone had any experience with setting up auth_ldap for nginx? I am
attempting to make this work, but nginx fails to start with the following
message:
Starting nginx nginx: [emerg] unknown directive auth_ldap_url in
/usr/local/nginx/conf/nginx.conf:48
startproc: exit status of
You have to compile nginx with the auth-ldap module. Have you done
this? I am doing using CloudBioLinux and here is how it is being done
in that context, but it would probably be easier just doing it by
hand:
https://github.com/chapmanb/cloudbiolinux/blob/master/cloudbio/galaxy/__init__.py
I
Another galaxy + nginx + LDAP user here.
Iry,
I have it working as well with help from Galaxy Wiki docs and mailing list
archives. The configure options that were used to compile nginx:
--add-module=../nginx-auth-ldap.20130823
--add-module=../nginx-upload-module-2.2 --with-pcre=../pcre-8.33
I've factored out the plugin discovery from the (page serving) plugin
framework and subclassed an initial stab at a hook plugin manager. The page
serving responsibilities are now in a separate subclass and the
visualization registry is based on that:
Well, having just hit this again myself, I found what was *actually* causing
the problem, rather than my vague recollection of what caused it, for which,
apologies.
In my case just now, it was caused by having an HTTP proxy set via the
environment variable http_proxy. Unsetting that fixed my
I've finally joined the happy throng suffering from Unicode errors. In my
particular case, running the deseq tool from the main toolshed brought down my
Galaxy server, and it wouldn't restart. The traceback in paster.log contained
this
Traceback (most recent call last):
[snip]
File
