s too.
Damion
Message: 5
Date: Fri, 5 Sep 2014 10:41:37 +
From: Pedersen Edvard
To: "galaxy-dev@lists.bx.psu.edu"
Subject: Re: [galaxy-dev] Concept for a Galaxy Versioned Fasta Data
Retrieval Tool
My PhD work may be of interest for this subject, although the primary foc
My PhD work may be of interest for this subject, although the primary focus has
been on generating databases comprising the changes from a specific timeframe,
and was not designed specifically for Galaxy. The similarities between my
system and the system you are proposing are that it can generat
Earlier on in the project analysis I was pursuing a Git solution because it
seemed all its features would work with documents/code/files of any kind and so
would be perfect for scientific reproducibility. But its ability to
efficiently archive non-documents is quite hit and miss, and the file s
su.edu
Cc: Hsiao, William
Subject: Re: [galaxy-dev] Concept for a Galaxy Versioned Fasta Data Retrieval
Tool
Am 25.08.2014 um 18:05 schrieb Dooley, Damion:
> Ok, I'll be very happy to see what you've accomplished there. I will read
> through what you've done when I return fr
To: Dooley, Damion; galaxy-dev@lists.bx.psu.edu
Cc: Hsiao, William
Subject: Re: [galaxy-dev] Concept for a Galaxy Versioned Fasta Data Retrieval
Tool
Hi Damion,
the idea sounds fantastic!
Can we go a step further and use a specific datatype that keeps entire
fasta files versioned and the user can
I would ask that such a tool be designed to work well in a stand-alone mode
outside of Galaxy.
Cheers,
On Sat, Aug 23, 2014 at 4:24 AM, Dooley, Damion
wrote:
> We are about to implement a fasta database (file) versioning system as a
> Galaxy tool. I wanted to get interested people's feedback
Hsiao, William
Subject: Re: [galaxy-dev] Concept for a Galaxy Versioned Fasta Data Retrieval
Tool
Hi Damion,
the idea sounds fantastic!
Can we go a step further and use a specific datatype that keeps entire
fasta files versioned and the user can choose which version he wants to
use, in any tool? P
mail.com]
Sent: Saturday, August 23, 2014 12:17 AM
To: Dooley, Damion; galaxy-dev@lists.bx.psu.edu
Cc: Hsiao, William
Subject: Re: [galaxy-dev] Concept for a Galaxy Versioned Fasta Data Retrieval
Tool
Hi Damion,
the idea sounds fantastic!
Can we go a step further and use a specific datatype that keeps
[m.vandenb...@gmail.com]
Sent: Saturday, August 23, 2014 2:25 AM
To: Dooley, Damion
Cc: galaxy-dev@lists.bx.psu.edu; Hsiao, William
Subject: Re: [galaxy-dev] Concept for a Galaxy Versioned Fasta Data Retrieval
Tool
I also think that this a great idea, and as you described it I think it's
fea
gruen...@gmail.com]
Sent: Saturday, August 23, 2014 12:17 AM
To: Dooley, Damion; galaxy-dev@lists.bx.psu.edu
Cc: Hsiao, William
Subject: Re: [galaxy-dev] Concept for a Galaxy Versioned Fasta Data Retrieval
Tool
Hi Damion,
the idea sounds fantastic!
Can we go a step further and use a specific data
I also think that this a great idea, and as you described it I think it's
feasible as a stand-alone galaxy tool.
Eventually you consider to implement this as a data manager (
https://wiki.galaxyproject.org/Admin/Tools/DataManagers) ?
On 23 August 2014 03:24, Dooley, Damion wrote:
> We are about
Hi Damion,
the idea sounds fantastic!
Can we go a step further and use a specific datatype that keeps entire
fasta files versioned and the user can choose which version he wants to
use, in any tool? Please have a look at my talk at GCC2012. Maybe you
are interested in the (old) patches. I woul
We are about to implement a fasta database (file) versioning system as a Galaxy
tool. I wanted to get interested people's feedback first before we roll ahead
with the prototype implementation. The versioning system aims to:
* Enable reproducible research: To recreate a search result at a certa
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