of North Carolina at Chapel Hill
From: Dannon Baker [dannonba...@me.com]
Sent: Tuesday, January 29, 2013 2:04 PM
To: Waldron, Michael H
Cc: Paul Boddie; James Taylor; Greg Von Kuster; galaxy-...@bx.psu.edu Dev
Subject: Re: [galaxy-dev] Error trying to add tool
hapel Hill
>
>
> ____________________
> From: Dannon Baker [dannonba...@me.com]
> Sent: Tuesday, January 29, 2013 1:48 PM
> To: Waldron, Michael H
> Cc: Paul Boddie; James Taylor; Greg Von Kuster; galaxy-...@bx.psu.edu Dev
> Subject: Re: [galaxy-dev]
ldron, Michael H
Cc: Paul Boddie; James Taylor; Greg Von Kuster; galaxy-...@bx.psu.edu Dev
Subject: Re: [galaxy-dev] Error trying to add tools from tool shed respository
I don't know why I thought we'd already checked this, but --
'hg st' will tell you which files have been modified
a at Chapel Hill
>
>
>
> From: Dannon Baker [dannonba...@me.com]
> Sent: Tuesday, January 29, 2013 1:37 PM
> To: Waldron, Michael H
> Cc: Paul Boddie; James Taylor; Greg Von Kuster; galaxy-...@bx.psu.edu
> Subject: Re: [galaxy-dev] Err
From: Dannon Baker [dannonba...@me.com]
Sent: Tuesday, January 29, 2013 1:37 PM
To: Waldron, Michael H
Cc: Paul Boddie; James Taylor; Greg Von Kuster; galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] Error trying to add tools from tool shed respository
So that's interesting. My
_
> From: Waldron, Michael H
> Sent: Tuesday, January 29, 2013 1:28 PM
> To: Paul Boddie; James Taylor
> Cc: Greg Von Kuster; galaxy-...@bx.psu.edu
> Subject: RE: [galaxy-dev] Error trying to add tools from tool shed respository
>
> As it turns out, it was fairly simple to i
of North Carolina at Chapel Hill
From: Paul Boddie [paul.bod...@biotek.uio.no]
Sent: Tuesday, January 29, 2013 12:01 PM
To: James Taylor
Cc: Waldron, Michael H; Greg Von Kuster; galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] Error trying to add tools from t
olina at Chapel Hill
From: Paul Boddie [paul.bod...@biotek.uio.no]
Sent: Tuesday, January 29, 2013 12:01 PM
To: James Taylor
Cc: Waldron, Michael H; Greg Von Kuster; galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] Error trying to add tools from tool shed respositor
On 29/01/13 17:33, James Taylor wrote:
Wasn't sure of the order, those are definitely after running the
update. Dannon's advice makes a good point, upgrading to the latest
mercurial should help.
If upgrading Mercurial will involve introducing another detour, you
could potentially check which v
with 2002 changes to 603 files (+1 heads)
>> not updating, since new heads added
>> (run 'hg heads' to see heads, 'hg merge' to merge)
>>
>>
>>
>> Mike Waldron
>> Systems Specialist
>> ITS - Research Computing Center
>> University of
arolina at Chapel Hill
From: Dannon Baker [dannonba...@me.com]
Sent: Tuesday, January 29, 2013 11:27 AM
To: Waldron, Michael H
Cc: James Taylor; Greg Von Kuster; galaxy-...@bx.psu.edu Dev
Subject: Re: [galaxy-dev] Error trying to add tools from tool shed respo
>
>
> From: Dannon Baker [dannonba...@me.com]
> Sent: Tuesday, January 29, 2013 11:15 AM
> To: Waldron, Michael H
> Cc: James Taylor; Greg Von Kuster; galaxy-...@bx.psu.edu
> Subject: Re: [galaxy-dev] Error trying to add tools from t
annon Baker [dannonba...@me.com]
Sent: Tuesday, January 29, 2013 11:15 AM
To: Waldron, Michael H
Cc: James Taylor; Greg Von Kuster; galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] Error trying to add tools from tool shed respository
You might try an 'hg merge --preview' to see what it ac
>> added 691 changesets with 2002 changes to 603 files (+1 heads)
>> not updating, since new heads added
>> (run 'hg heads' to see heads, 'hg merge' to merge)
>>
>>
>>
>> Mike Waldron
>> Systems Specialist
>> ITS - Research Compu
TS - Research Computing Center
University of North Carolina at Chapel Hill
From: ja...@taylorlab.org [ja...@taylorlab.org] on behalf of James Taylor
[ja...@jamestaylor.org]
Sent: Tuesday, January 29, 2013 11:04 AM
To: Waldron, Michael H
Cc: Greg Von Kuster; galax
_________________
> From: Greg Von Kuster [g...@bx.psu.edu]
> Sent: Tuesday, January 29, 2013 9:12 AM
> To: Waldron, Michael H
> Cc: galaxy-...@bx.psu.edu
> Subject: Re: [galaxy-dev] Error trying to add tools from tool shed
> respository
>
> Hi Michael,
>
> Did
3 10:07 AM
> To: Waldron, Michael H
> Cc: galaxy-...@bx.psu.edu
> Subject: Re: [galaxy-dev] Error trying to add tools from tool shed respository
>
> Have you made some changes to your local Galaxy code base that require
> merging?
>
> On Jan 29, 2013, at 9:57 AM, Waldron, Mi
, January 29, 2013 10:07 AM
To: Waldron, Michael H
Cc: galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] Error trying to add tools from tool shed respository
Have you made some changes to your local Galaxy code base that require merging?
On Jan 29, 2013, at 9:57 AM, Waldron, Michael H wrote:
To be honest
cialist
> ITS - Research Computing Center
> University of North Carolina at Chapel Hill
>
> From: Greg Von Kuster [g...@bx.psu.edu]
> Sent: Tuesday, January 29, 2013 9:52 AM
> To: Waldron, Michael H
> Cc: galaxy-...@bx.psu.edu
> Subject: Re: [galaxy-dev] Error trying to add tools
y-...@bx.psu.edu<mailto:galaxy-...@bx.psu.edu>
Subject: Re: [galaxy-dev] Error trying to add tools from tool shed respository
Hi Michael,
Did you restart your Galaxy server after updating from Galaxy central? Your
paster log shows the following:
File
'/nas02/apps/galaxy-prod/galaxy-d
Waldron
> Systems Specialist
> ITS - Research Computing Center
> University of North Carolina at Chapel Hill
>
> From: Greg Von Kuster [g...@bx.psu.edu]
> Sent: Tuesday, January 29, 2013 9:12 AM
> To: Waldron, Michael H
> Cc: galaxy-...@bx.psu.edu
> Subject: Re: [galaxy-
, 2013 9:12 AM
To: Waldron, Michael H
Cc: galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] Error trying to add tools from tool shed respository
Hi Michael,
Did you restart your Galaxy server after updating from Galaxy central? Your
paster log shows the following:
File
'/nas02/apps/galaxy
ri Feb 03 11:15:29 2012 -0500
> summary: close branch
>
>
> Mike Waldron
> Systems Specialist
> ITS - Research Computing Center
> University of North Carolina at Chapel Hill
>
> From: Greg Von Kuster [g...@bx.psu.edu]
> Sent: Tuesday, January 29, 2013 9:00 AM
, Michael H
Cc: galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] Error trying to add tools from tool shed respository
Hi Michael,
The previous post you mention is outdated. The main Galaxy tool shed from
which you are pulling has been tracking Galaxy dist for some time now, so you
should only have to
Hi Michael,
The previous post you mention is outdated. The main Galaxy tool shed from
which you are pulling has been tracking Galaxy dist for some time now, so you
should only have to update to that.
However, the communication layer between Galaxy and the tool shed is backward
compatible to
Users are getting the following error when trying to add a tool from the tool
shed repository on our local galaxy instance.
"An error occurred. See the error logs for more information. (Turn debug on to
display exception reports here)"
The galaxy server log shows the message included below. The
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