Re: [galaxy-dev] Help with cluster setup

2014-05-01 Thread Nate Coraor
uration. They should also only be used if you are attempting to set up "run jobs as the real user" job running capabilities. >> >> > Further more when I want to kill my jobs by clicking in galaxy web,the job keeps on running in my background.I do not know how to fix thi

Re: [galaxy-dev] Help with cluster setup

2014-04-30 Thread 沈维燕
ng in my > background.I do not know how to fix this. > > Any help on this would be grateful.Thank you very much. > > Job deletion in the pbs runner was recently broken, but a fix for this bug > will be part of the next stable release (on Monday). > > --nate > > >

Re: [galaxy-dev] Help with cluster setup

2013-08-29 Thread Nate Coraor
hown_script">scripts/external_chown_script.py > > > > > > > > The galaxy_external_* options are only supported with the drmaa plugin, and > actually only belong in the univese_wsgi.ini for the moment, they have not > been migrated to the new-style job

Re: [galaxy-dev] Help with cluster setup

2013-08-14 Thread Jurgens de Bruin
gt; > id="galaxy_external_chown_script">scripts/external_chown_script.py >> > >> > >> > >> >> The galaxy_external_* options are only supported with the drmaa plugin, >> and actually only belong in the univese_wsgi.ini for the

[galaxy-dev] Help with cluster setup

2013-08-13 Thread Jurgens de Bruin
tyle job configuration. They should also > only be used if you are attempting to set up "run jobs as the real user" > job running capabilities. > > > Further more when I want to kill my jobs by clicking > in galaxy web,the job keeps on running in my > background.I do

Re: [galaxy-dev] Help with cluster setup

2013-08-08 Thread Nate Coraor
; in galaxy web,the job keeps on running in my > background.I do not know how to fix this. > Any help on this would be grateful.Thank you very much. Job deletion in the pbs runner was recently broken, but a fix for this bug will be part of the next stable release (on Monday). --na

Re: [galaxy-dev] Help with cluster setup

2013-08-08 Thread Nate Coraor
On Aug 7, 2013, at 7:55 AM, Jurgens de Bruin wrote: > Hi, > > This is my first Galaxy installation setup so apologies for stupid questions. > I am setting up Galaxy on a Cluster running Torque as the resource manager. I > am working through the documentation but I am unclear on some things: >

Re: [galaxy-dev] Help with cluster setup

2013-08-07 Thread shenwiyn
bject: [galaxy-dev] Help with cluster setup Hi, This is my first Galaxy installation setup so apologies for stupid questions. I am setting up Galaxy on a Cluster running Torque as the resource manager. I am working through the documentation but I am unclear on some things: Firstly I am unable to

[galaxy-dev] Help with cluster setup

2013-08-07 Thread Jurgens de Bruin
Hi, This is my first Galaxy installation setup so apologies for stupid questions. I am setting up Galaxy on a Cluster running Torque as the resource manager. I am working through the documentation but I am unclear on some things: Firstly I am unable to find : *start_job_runners *within the univer