Re: [galaxy-dev] Tool refuses to appear in Toolshed package contents

2013-10-30 Thread Lukasse, Pieter
to run some more detailed validations? Thanks, Pieter. -Original Message- From: Greg Von Kuster [mailto:g...@bx.psu.edu] Sent: dinsdag 29 oktober 2013 13:29 To: Lukasse, Pieter Cc: galaxy-...@bx.psu.edu Dev Subject: Re: [galaxy-dev] Tool refuses to appear in Toolshed package contents

Re: [galaxy-dev] Tool refuses to appear in Toolshed package contents

2013-10-30 Thread Bjoern Gruening
Hi Pieter, I tried to reproduce it and looked over your files. I also tried to reproduce it and can't. For me its showing up nicely: http://testtoolshed.g2.bx.psu.edu/view/bgruening/upload_testing So please try to reset metadata of that repository. And hopefully your issues are gone magically

Re: [galaxy-dev] Tool refuses to appear in Toolshed package contents

2013-10-30 Thread Lukasse, Pieter
Subject: Re: [galaxy-dev] Tool refuses to appear in Toolshed package contents Hi Pieter, I tried to reproduce it and looked over your files. I also tried to reproduce it and can't. For me its showing up nicely: http://testtoolshed.g2.bx.psu.edu/view/bgruening/upload_testing So please try

Re: [galaxy-dev] Tool refuses to appear in Toolshed package contents

2013-10-29 Thread Lukasse, Pieter
: [galaxy-dev] Tool refuses to appear in Toolshed package contents Hi Pieter, Perhaps I'm misunderstanding this issue. Can you clarify the problem? Thanks, Greg Von kuster On Oct 25, 2013, at 9:53 AM, Lukasse, Pieter pieter.luka...@wur.nl wrote: Kind of assuming Greg did this yesterday when he

Re: [galaxy-dev] Tool refuses to appear in Toolshed package contents

2013-10-29 Thread Peter Cock
On Tue, Oct 29, 2013 at 6:23 AM, Lukasse, Pieter pieter.luka...@wur.nl wrote: Hi Greg, what I mean is that I don't expect any other errors in my files since I corrected the errors you reported. When using my XML editor I also don't get any errors, so the files seem OK. However, the problem

Re: [galaxy-dev] Tool refuses to appear in Toolshed package contents

2013-10-29 Thread Greg Von Kuster
Hi Pieter, The tool shed is undoubtedly not the problem here. The tool is simply not identified as a Galaxy tool for some reason. When it had xml validation errors, it was not loaded as a Galaxy tool due to the errors. I'm not sure what new issue is causing the xml to not load properly as a

Re: [galaxy-dev] Tool refuses to appear in Toolshed package contents

2013-10-25 Thread Lukasse, Pieter
: donderdag 24 oktober 2013 17:29 To: Lukasse, Pieter Cc: 'Peter Cock'; galaxy-...@bx.psu.edu Subject: Re: [galaxy-dev] Tool refuses to appear in Toolshed package contents Hello Pieter, There are 2 different issues in 2 of your xml files that make them invalid XML. 1. In your tool_dependencies.xml

Re: [galaxy-dev] Tool refuses to appear in Toolshed package contents

2013-10-25 Thread Peter Cock
On Fri, Oct 25, 2013 at 2:26 PM, Lukasse, Pieter pieter.luka...@wur.nl wrote: Hi Greg, Thanks for the tips. A validator would indeed be great as I made the changes you suggested but still it did not solve the issue (the tool still does not appear – so probably yet another mistake is

Re: [galaxy-dev] Tool refuses to appear in Toolshed package contents

2013-10-25 Thread Lukasse, Pieter
] Sent: vrijdag 25 oktober 2013 15:49 To: Lukasse, Pieter Cc: Greg Von Kuster; galaxy-...@bx.psu.edu Subject: Re: [galaxy-dev] Tool refuses to appear in Toolshed package contents On Fri, Oct 25, 2013 at 2:26 PM, Lukasse, Pieter pieter.luka...@wur.nl wrote: Hi Greg, Thanks for the tips

Re: [galaxy-dev] Tool refuses to appear in Toolshed package contents

2013-10-25 Thread Greg Von Kuster
Subject: Re: [galaxy-dev] Tool refuses to appear in Toolshed package contents On Fri, Oct 25, 2013 at 2:26 PM, Lukasse, Pieter pieter.luka...@wur.nl wrote: Hi Greg, Thanks for the tips. A validator would indeed be great as I made the changes you suggested but still it did not solve

Re: [galaxy-dev] Tool refuses to appear in Toolshed package contents

2013-10-24 Thread Peter Cock
On Thu, Oct 24, 2013 at 12:09 PM, Lukasse, Pieter pieter.luka...@wur.nl wrote: Hi , I have a toolshed repository where I expect 5 tools to appear in the “Contents of this repository” section but one of them fails to appear in the list (see screenshot). Where can I find out what is going