Re: [galaxy-dev] UnboundLocalError: local variable 'prior_installation_required' referenced before assignment

2013-09-20 Thread Björn Grüning
Hi Peter and Carlos, On Mon, Sep 16, 2013 at 8:57 PM, Carlos Borroto carlos.borr...@gmail.com wrote: I did an extra test. Started with a clean 'galaxy-dist'. This time both repositories fail with the same error. I guess before something was cached for the repository with version 0.1.4.

Re: [galaxy-dev] UnboundLocalError: local variable 'prior_installation_required' referenced before assignment

2013-09-17 Thread Carlos Borroto
Thanks!. I was actually in the process of testing this combination. I can confirm this error goes away when using a local instance of galaxy-central instead. On Mon, Sep 16, 2013 at 4:18 PM, Dave Bouvier d...@bx.psu.edu wrote: Carlos, The issue you're experiencing is due to features being

Re: [galaxy-dev] UnboundLocalError: local variable 'prior_installation_required' referenced before assignment

2013-09-17 Thread Carlos Borroto
On Mon, Sep 16, 2013 at 4:19 PM, Peter Cock p.j.a.c...@googlemail.com wrote: On Mon, Sep 16, 2013 at 8:57 PM, Carlos Borroto carlos.borr...@gmail.com wrote: I did an extra test. Started with a clean 'galaxy-dist'. This time both repositories fail with the same error. I guess before something

Re: [galaxy-dev] UnboundLocalError: local variable 'prior_installation_required' referenced before assignment

2013-09-17 Thread Björn Grüning
Hi Carlos, On Mon, Sep 16, 2013 at 4:19 PM, Peter Cock p.j.a.c...@googlemail.com wrote: On Mon, Sep 16, 2013 at 8:57 PM, Carlos Borroto carlos.borr...@gmail.com wrote: I did an extra test. Started with a clean 'galaxy-dist'. This time both repositories fail with the same error. I guess

Re: [galaxy-dev] UnboundLocalError: local variable 'prior_installation_required' referenced before assignment

2013-09-17 Thread Carlos Borroto
I did an extra test. Started with a clean 'galaxy-dist'. This time both repositories fail with the same error. I guess before something was cached for the repository with version 0.1.4. I used biopython repository as a guide to write my tool dependency definition:

[galaxy-dev] UnboundLocalError: local variable 'prior_installation_required' referenced before assignment

2013-09-16 Thread Carlos Borroto
Hi, I got this error when trying to install a repository I created defining a tool dependency. The odd thing is the exact same definition worked for the previous version of the same tool. This is the repository failing to install, see full trace below:

Re: [galaxy-dev] UnboundLocalError: local variable 'prior_installation_required' referenced before assignment

2013-09-16 Thread Dave Bouvier
Carlos, The issue you're experiencing is due to features being added in the test tool shed that have not yet been accounted for in Galaxy's stable release to galaxy-dist. To resolve this issue, you'll need to be running a recently updated checkout of galaxy-central on the default branch,

Re: [galaxy-dev] UnboundLocalError: local variable 'prior_installation_required' referenced before assignment

2013-09-16 Thread Peter Cock
On Mon, Sep 16, 2013 at 8:57 PM, Carlos Borroto carlos.borr...@gmail.com wrote: I did an extra test. Started with a clean 'galaxy-dist'. This time both repositories fail with the same error. I guess before something was cached for the repository with version 0.1.4. I used biopython repository

Re: [galaxy-dev] UnboundLocalError: local variable 'prior_installation_required' referenced before assignment

2013-09-16 Thread Carlos Borroto
On Mon, Sep 16, 2013 at 4:46 PM, Björn Grüning bjoern.gruen...@pharmazie.uni-freiburg.de wrote: Hi Peter, When I install my repository which has package_biopython_1_61 as a dependency, package_atlas_3_10 and package_lapack_3_4 show as Installed, missing tool dependencies(Grey). However