Re: [galaxy-dev] nglims/removing multiplexing

2013-07-03 Thread Lee Katz
It works! Thanks! And--getting back to the original request--it doesn't have the multiplexing button anymore after setting it as avalable: false. Awesome! On Tue, Jul 2, 2013 at 7:19 PM, Brad Chapman chapm...@50mail.com wrote: Lee; I pushed a fix to the nglims fork on bitbucket which

Re: [galaxy-dev] nglims/removing multiplexing

2013-07-02 Thread Dannon Baker
On Mon, Jul 1, 2013 at 8:34 PM, Brad Chapman chapm...@50mail.com wrote: This was a typo in the downgrade function for one of the patches. I pushed a fix so if you update from bitbucket things should work smoothly again (once we get to problem 2 below). For anyone with galaxy-dist commit

Re: [galaxy-dev] nglims/removing multiplexing

2013-07-02 Thread Lee Katz
Thanks! I did hg pull -u. For the database, I downgraded to 108 and then upgraded again but got this error when upgrading. Is it due to the Ubuntu bug? Or something else? Should I be sticking with a particular Hg version instead of the latest? $ sh manage_db.sh upgrade 115 - 116... Tables

Re: [galaxy-dev] nglims/removing multiplexing

2013-07-02 Thread Lee Katz
Actually I didn't notice that I had an error in 114-115 in addition to 115-116 (below). So actually I just deleted the whole database, checked out a fresh version with hg, upgraded, upgraded the database with manage_db, and then ran the add_defaults script for nglims. Everything works and is

Re: [galaxy-dev] nglims/removing multiplexing

2013-07-01 Thread Brad Chapman
Lee; Hi, I would like to remove the multiplexed menu from the nglims sample information form. How would I do that? In our lab, we don't want submitters making their own libraries since they might accidentally use the same barcodes or somehow mess up others' libraries. We want to remove

Re: [galaxy-dev] nglims/removing multiplexing

2013-07-01 Thread Lee Katz
Thanks Brad! I updated with hg pull -u and then ran sh manage_db.sh upgrade but I have an error. Could you help? I backed up my database before I ran the upgrade script, so I can go back in time. (sorry about the wall of text) 109 - 110...

Re: [galaxy-dev] nglims/removing multiplexing

2013-07-01 Thread Brad Chapman
Lee; Thanks Brad! I updated with hg pull -u and then ran sh manage_db.sh upgrade but I have an error. Could you help? I backed up my database before I ran the upgrade script, so I can go back in time. I think there is something funky going on with the version of SQLAlchemy-migrate

Re: [galaxy-dev] nglims/removing multiplexing

2013-07-01 Thread Dannon Baker
It's that previous versions of sqlalchemy-migrate didn't clean up these tables under sqlite and didn't mind overwriting them if they existed, but the new version both does clean up after itself, and expects the table to not exist, failing miserably if it does. I think there's a Trello card for

Re: [galaxy-dev] nglims/removing multiplexing

2013-07-01 Thread Lee Katz
Thank you. I feel like this next error might be my fault (I don't know python very well). I think it is saying that I don't have a module, but it is installed via Ubuntu aptitude, so now I don't really know what to do next. I reinstalled the module like so: aptitude reinstall python-apport $

Re: [galaxy-dev] nglims/removing multiplexing

2013-07-01 Thread Brad Chapman
Lee; Thanks for all the patience with this. I'll take the errors in order: Original exception was: Traceback (most recent call last): [...] raise TypeError(upgrade/downgrade functions must accept engine TypeError: upgrade/downgrade functions must accept engine parameter (since version

[galaxy-dev] nglims/removing multiplexing

2013-06-28 Thread Lee Katz
Hi, I would like to remove the multiplexed menu from the nglims sample information form. How would I do that? In our lab, we don't want submitters making their own libraries since they might accidentally use the same barcodes or somehow mess up others' libraries. We want to remove that option