On Wed, Apr 6, 2011 at 10:30 PM, Luobin Yang yangl...@isu.edu wrote:
Hi,
The reload a tool's configuration menu avoids restarting Galaxy system
when a tool's web interface changed, but it doesn't seem to reload the
.loc files that a tool's XML file uses. I am wondering if it's possible to
Dear,
I need to add a number of tools to my local Galaxy installation, but the size
of the wrappers I've seen keep me from writing one.
Are there wrapper generators to make this task easier? If not, I might want to
make one. A possible implementation I'm considering is to first make a (WSDL)
Hi Jeroen,
You can use web services thanks to the work from Sumedha Ganjoo et al. from the
University of Georgia. You can find that on the community site:
Tools Shed - Data Source - Suite of Web service addition tools.
Hi all,
In a tool XML I have a select menu param within/driving a conditional tag
and in the workflow editor it doesn't let me choose to allow the user to set
this select menu at runtime? Is this a bug?
best,
leandro
___
Please keep all
Hi Pieter,
Thanks for the reply, but from the looks of it, this is a way to incorporate
webservice clients into galaxy. What I want is slightly different.
I'm talking about adding a normal command line tool (an aligner for example)
but I'm not willing to write a wrapper each time (the wrapper
On Fri, May 13, 2011 at 2:12 PM, J. F. J. Laros j.f.j.la...@lumc.nl wrote:
Hi Pieter,
Thanks for the reply, but from the looks of it, this is a way to incorporate
webservice clients into galaxy. What I want is slightly different.
I'm talking about adding a normal command line tool (an
An alternative might be to have something like GenePattern has. It's not as
seamless for the person who wants the wrapper as what's been suggested here,
but it's easier than creating a lengthy XML file.
GenePattern has an HTML Form interface for entering all the components of
your tool,
Dear Dave,
This indeed sounds like an interesting alternative. I'll look into it.
With kind regards,
Jeroen.
On Fri, May 13, 2011 at 01:48:12PM +, Dave Walton wrote:
An alternative might be to have something like GenePattern has. It's not as
seamless for the person who wants the wrapper
On May 12, 2011, at 3:43 PM, Nate Coraor wrote:
Shantanu Pavgi wrote:
I need some help in configuring galaxy with SGE scheduler using unified
method. The galaxy is running on a system distinct from SGE scheduler
install. The cluster nodes can access galaxy install, galaxy-tools and
