Hi all,
I wrote a script which executes a workflow via the API.
I was wondering whether it is possible to use non-library
input for the workflow. At the moment the script submits
each data into a library and then uses this data as input:
for step_id, ds_in in
Both of these tables were introduced in the most recent Galaxy release.
On Jul 25, 2012, at 10:32 PM, Derrick Lin wrote:
ar..
Just saw the news brief, will that be possible that these two tables are
added as part of the Tool Shed and Admin Genome Indexing update??
Regards,
D
On Thu,
Greetings,
I have a process that is going to generate dozens of output files,
each of which I want to retain as a data repository that will be
leveraged by other downstream tools. I could just point the
downstream tool at the directory, and it'll know what to look for,
rather than to have to
If I turn on autoscale via the cloud console page, autoscale shows turned off
on page refresh. This occurs with both safari and firefox on a Mac. I have not
tried other OS/Browser combinations. Where on the server is the autoscale
configuration? I would like to see whether or not the console
Brian,
Composite datatypes are what you want:
http://wiki.g2.bx.psu.edu/Admin/Datatypes/Composite%20Datatypes
Tool that use composite datatypes include the rGenetics tools and velvetg:
/tools/rgenetics/
tools/sr_assembly/velvetg
Best,
J.
On Jul 26, 2012, at 8:22 AM, Brian Haas wrote:
Amine,
Can you please upload the problematic datasets to our public server and see if
you can reproduce the problem there? Also, please share the history containing
the problematic datasets with me (History Options -- Share or Publish --
Share with User -- my email address) and I'll take a
Excellent! Thanks! I'll have a look,
-b
On Thu, Jul 26, 2012 at 10:45 AM, Jeremy Goecks jeremy.goe...@emory.edu wrote:
Brian,
Composite datatypes are what you want:
http://wiki.g2.bx.psu.edu/Admin/Datatypes/Composite%20Datatypes
Tool that use composite datatypes include the rGenetics
Hi, all
I just tried installing galaxy in amazon cloud following the instruction
here:http://wiki.g2.bx.psu.edu/CloudMan.
Using this ami-da58aab3, I do not have http service after the instance
is started. I logined into the instance and confirmed it. How should I
troubleshoot it?
Could your
I am trying to work on 23 giga text file. My laptop being not powerful
enough I have split it in 10 files and made some modification on them. Now
I have made (linux and window) a double boot on my laptop and install
galaxy ( on the linux partition). Unfortunately, galaxy doesn t have enough
memory
On Mon, Jul 16, 2012 at 7:07 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Mon, Jul 16, 2012 at 6:10 PM, Espin, Almudena
a.p.almud...@cranfield.ac.uk wrote:
Hi guys,
I am writing a wrapper for makeblastdb. The problem is that
Galaxy doesn’t support the blastdb data format, so this
Hi Tomithy,
Thank you so much your answer. I'll study this link.
Best regards,
--
Rodrigo Antonio Faccioli
Ph.D Student in Electrical Engineering
University of Sao Paulo - USP
Engineering School of Sao Carlos - EESC
Department of Electrical Engineering - SEL
Intelligent System in Structural
On Wed, Jun 27, 2012 at 7:54 PM, Edward Kirton eskir...@lbl.gov wrote:
sorry for the late reply, i've been away for almost a month. thanks for
your work on this, i'll update the tools and upload to toolshed asap.
Hi Edward,
As you will have seen I've (finally) got back to looking at the
Quoting romain desprat (2012-07-26 13:49:02)
galaxy ( on the linux partition). Unfortunately, galaxy doesn t have
enough memory to work with this file.
Exactly what error is Galaxy reporting?
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Quoting Peter Cock (2012-07-25 20:40:42)
On Wed, Jul 25, 2012 at 9:35 PM, David Hoover hoove...@helix.nih.gov wrote:
dataset from a history, all the delete icons disappear from the
datasets. They come back if I refresh the page. Has anyone else
My fault, should be fixed in 6d23049609a9.
Hi galaxy team,
How can we make an index file for a presorted bam file using galaxy?
Thanks,
Deepthi
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