Hi Nate,
I have set the new_file_path to the FTP upload directory as you
suggested. new_file_path=/mnt/galaxydb/ftp
This did not succeed however: still there is copying to the /tmp directory.
I also see that importing data sets into data libraries from a directory
of files behaves
Hi all,
This is an idea I mentioned to Dannon (off list during discussion
about moving the NCBI BLAST+ wrappers to the Tool Shed), and
he seemed positive about it.
Currently the left hand pane of the ToolShed (once logged in)
looks like this:
Search
* Search for valid tools
* Search for
A peculiar quirk - I'm configuring a new Galaxy system for production
use and can't get it to recognise my account as an admin, i.e. the admin
menu doesn't appear after I've added my email address to the admin_user
line in the universe file. Of course, I've restarted the instance
multiple
Hi, Galaxy Developers,
I have a question that is very similar to the following thread;
http://dev.list.galaxyproject.org/Problem-fetching-updates-to-toolshed-tool-td4353417.html
Basically whenever I try to install a tool from the toolshed, it appears that a
trailing slash is not appended to
Here is a copy of the whole VirtualHost section.
Thanks,
Adhemar
VirtualHost lbas046.cnptia.embrapa.br:443
ServerName lbas046.cnptia.embrapa.br
ErrorLog logs/galaxy_ssl_error_log
TransferLog logs/galaxy_ssl_access_log
LogLevel warn
SSLEngine on
SSLCertificateFile
Here is a copy of the whole VirtualHost section.
Thanks,
Adhemar
VirtualHost lbas046.cnptia.embrapa.br:443
ServerName lbas046.cnptia.embrapa.br
ErrorLog logs/galaxy_ssl_error_log
TransferLog logs/galaxy_ssl_access_log
LogLevel warn
SSLEngine on
SSLCertificateFile
It's the last rewrite rule that's causing the infinite recursion:
RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P]
Check out this link:
http://httpd.apache.org/docs/current/mod/mod_rewrite.html#rewriterule
Look for the table of given rules and resulting substitutions - the proxying
Hi Adhemar,
Could you try the following?:
VirtualHost lbas046.cnptia.embrapa.br:443
ServerName lbas046.cnptia.embrapa.br
ErrorLog logs/galaxy_ssl_error_log
TransferLog logs/galaxy_ssl_access_log
LogLevel warn
SSLEngine on
SSLCertificateFile
Hi Nate!
That line really solved the problem.
RewriteCond %{IS_SUBREQ} ^false$
No more errors in my log!
Thank you, I really appreciate it.
Adhemar
2012/8/22 Nate Coraor n...@bx.psu.edu
Hi Adhemar,
Could you try the following?:
VirtualHost lbas046.cnptia.embrapa.br:443
The VCF format (
http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-41
)
specifies . to represent missing values.
lib/galaxy/visualization/tracks/data_providers.py throws an float conversion error when
the qual field of a vcf file has the
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