Re: [galaxy-dev] DRMAA broken following SGE update. How to fix?
BUMP Does anyone have any idea on this? Our Galaxy is currently out of action until this is sorted. Thanks, Chris On 22/08/11 10:08, Chris Cole wrote: Hi, Following a recent update to our SGE, DRMAA is failing to load in galaxy. The reason being that the path has changed. How do I change the path for galaxy to find the libdrmaa module? Cheers, Chris ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] DRMAA broken following SGE update. How to fix?
Hi Chris, Take a look at this file : lib/galaxy/jobs/runners/drmaa.py in your galaxy directory. You can export a path for binaries here. For example : export PATH=$PATH:/opt/bin/ before export PYTHONPATH Moreover, do not forget other path values in your service script or in your galaxy user profile. Hope this help. 2011/8/23 Roman Valls brainst...@nopcode.org Did you adjust the SGE_ROOT environment variable to point to the libdrmaa for SGE (probably /opt/sge_62u5_gr/bin/lx24-amd64) ? This is of course just a guess, could you please provide some error messages/logs ? Cheers, Roman On 2011-08-23 10:20, Chris Cole wrote: BUMP Does anyone have any idea on this? Our Galaxy is currently out of action until this is sorted. Thanks, Chris On 22/08/11 10:08, Chris Cole wrote: Hi, Following a recent update to our SGE, DRMAA is failing to load in galaxy. The reason being that the path has changed. How do I change the path for galaxy to find the libdrmaa module? Cheers, Chris ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Brad's GFF parser in a Biopython repository
Hi Brad, I managed to do a git script to select out the GFF code and tests from your bcbb repository and get it into the Biopython source tree. The folder changes made it interesting ;) Input: https://github.com/chapmanb/bcbb (master branch) Output: https://github.com/peterjc/biopython/tree/brad_gff The tests pass, but that is as far as I have got with this. Brad, could you have a look at this new branch for sanity checking please? Peter ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Fwd: [SOLVED] Re: DRMAA broken following SGE update. How to fix?
I'm glad it worked Chris, I'm keeping thread on the mailing list for future reference... Original Message Subject: Re: [galaxy-dev] DRMAA broken following SGE update. How to fix? Date: Tue, 23 Aug 2011 11:56:13 +0100 From: Chris Cole ch...@compbio.dundee.ac.uk Organization: University of Dundee To: Roman Valls brainst...@nopcode.org Hi, The SGE_ROOT variable was the same as always, but it turns out I had a DRMAA_LIBRARY_PATH path that was still pointing to the old path. It's such a long time since I set up galaxy that I'd forgotten about it. Changed it and Galaxy is working again. Thanks to you and Remy for pointing me in the right direction. Chris On 23/08/11 09:32, Roman Valls wrote: Did you adjust the SGE_ROOT environment variable to point to the libdrmaa for SGE (probably /opt/sge_62u5_gr/bin/lx24-amd64) ? This is of course just a guess, could you please provide some error messages/logs ? Cheers, Roman On 2011-08-23 10:20, Chris Cole wrote: BUMP Does anyone have any idea on this? Our Galaxy is currently out of action until this is sorted. Thanks, Chris On 22/08/11 10:08, Chris Cole wrote: Hi, Following a recent update to our SGE, DRMAA is failing to load in galaxy. The reason being that the path has changed. How do I change the path for galaxy to find the libdrmaa module? Cheers, Chris ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] visualization tool
Hi All, I want to add my own Visualization tool in local instance of galaxy .how i will do it in galaxy ? i want to integrate jmol in galaxy. Regards shashi ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Boolean options in toolconfigs: yes/no vs. give/omit flag.
On 08/23/2011 03:47 AM, Peter Cock wrote: On Mon, Aug 22, 2011 at 5:29 PM, Samuel Lampa samuel.la...@scilifelab.uu.se wrote: Hi, I'm trying to parse the XML toolconfig format, for generating a lightweight command config wizard in an Eclipse based product. I wonder: Boolean parameters for some tools (such as the emboss/textsearch one), seems to allow always giving the parameter's flag at all times, and just change the following value between yes and no for these params, like: textsearch -caseinsensitive yes or textsearch -caseinsensitive no On the other hand, I guess there are many tools which tell such boolean options just by giving the flag itself, so it would by analogy be: textsearch -caseinsensitive or textsearch My question is, how can I see the difference between these two cases, in the tool config file? (Unfortunately I don't know any of the wrapped tools good enough to know where to look for a flag of the latter kind). That will be hard - there are several ways to write such a wrapper in Galaxy. e.g. a select showing the user text like Case sensitive and Case insensitive with values yes and no where the cheetah template contains: textsearch -caseinsensitive $case Or, a boolean select where the values are again yes and no with the same template. See for example ntoa in the BowTie wrapper, file: tools/sr_mapping/bowtie_wrapper.xml If the Unix tool expected a switch (present/absent) rather than an argument with a value (yes/no) then you might use a select with two options Case sensitive and Case insensitive with values yes and no where the cheetah template contains: textsearch #if $case==yes -caseinsensitive #end if Or, you might prefer to use values of -caseinsensitive and then the cheetah becomes just: textsearch $case Again, the above hypothetical select parameter $case could be a boolean parameter. e.g. See the filter_query option in the blastn wrapper, file tools/ncbi_blast_plus/ncbi_blastn_wrapper.xml Peter Many thanks for this info, that helps a lot! I guess I will either need to parse the cheetah if-syntax then (have actually played with a rudimental parser in ANTLR already[1]) or just do some modifications of the tool config files, to make them work for our purposes [2]. Any other hints are of course welcome! Cheers, Samuel [1] http://saml.rilspace.org/ebnf-parser-for-parts-of-the-galaxy-toolconfigs-with-antlr [2] Basically we have been prepared to need to do this anyway, since we cannot make use of wrappers using an accompanying script file, but we have assumed that the existing tool configs will be much valuable as a starting point anyway. -- System Expert / Bioinformatician SNIC-UPPMAX HPC Center Uppsala University, Sweden -- E-mail: samuel.la...@scilifelab.uu.se Phone: +46 (0)18 - 471 1060 WWW: http://www.uppmax.uu.se Uppnex: https://www.uppnex.uu.se ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] visualization tool
Hi Shashi, Have a look at: http://wiki.g2.bx.psu.edu/Admin/Tools/External%20Display%20Applications%20Tutorial And at the XML files in the directory: $GALAXY_ROOT/display_applications/ Thanks for using Galaxy, Dan On Aug 23, 2011, at 7:30 AM, shashi shekhar wrote: Hi All, I want to add my own Visualization tool in local instance of galaxy .how i will do it in galaxy ? i want to integrate jmol in galaxy. Regards shashi ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] next galaxy-dist update
We are in need of a galaxy upgrade (we missed the last galaxy-dist update at the end of June). However, we don't want to update to a 2 month old release only to have a new release come out shortly after. Could someone on the development team give me an estimate of when the next galaxy-dist update will happen? -- Glen L. Beane Senior Software Engineer The Jackson Laboratory (207) 288-6153 ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] visualization tool
Hi, In Galaxy there is visualization option .how it works .Are documents are available for visualization tool. Thanks for Reply Regards shashi On Tue, Aug 23, 2011 at 5:55 PM, Daniel Blankenberg d...@bx.psu.edu wrote: Hi Shashi, Have a look at: http://wiki.g2.bx.psu.edu/Admin/Tools/External%20Display%20Applications%20Tutorial And at the XML files in the directory: $GALAXY_ROOT/display_applications/ Thanks for using Galaxy, Dan On Aug 23, 2011, at 7:30 AM, shashi shekhar wrote: Hi All, I want to add my own Visualization tool in local instance of galaxy .how i will do it in galaxy ? i want to integrate jmol in galaxy. Regards shashi ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] visualization tool
On Tue, Aug 23, 2011 at 6:17 PM, shashi shekhar meshash...@gmail.comwrote: Hi, Iis it possible to add own visualization tool in galaxy? On Tue, Aug 23, 2011 at 5:55 PM, Daniel Blankenberg d...@bx.psu.eduwrote: Hi Shashi, Have a look at: http://wiki.g2.bx.psu.edu/Admin/Tools/External%20Display%20Applications%20Tutorial And at the XML files in the directory: $GALAXY_ROOT/display_applications/ Thanks for using Galaxy, Dan On Aug 23, 2011, at 7:30 AM, shashi shekhar wrote: Hi All, I want to add my own Visualization tool in local instance of galaxy .how i will do it in galaxy ? i want to integrate jmol in galaxy. Regards shashi ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] samtools mpileup update
Is there any good reason why Galaxy can't use a more recent version of samtools? The only difference I can see is the mpileup command. The algorithm by which mpileup finds SNPs is a little different. Does anyone know if the file format has changed? The only files that need to change are sam_pileup.py and sam_pileup.xml. David Hoover Helix Systems Staff http://helix.nih.gov ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] visualization tool
Hi Shashi, For information on Galaxy's visualization tool, Trackster, see: http://wiki.g2.bx.psu.edu/Learn/Visualization If you are interested in adding your own visualization tool for e.g. displaying Galaxy datasets, please see the previously provided information. Thanks for using Galaxy, Dan On Aug 23, 2011, at 8:47 AM, shashi shekhar wrote: Hi, In Galaxy there is visualization option .how it works .Are documents are available for visualization tool. Thanks for Reply Regards shashi On Tue, Aug 23, 2011 at 5:55 PM, Daniel Blankenberg d...@bx.psu.edu wrote: Hi Shashi, Have a look at: http://wiki.g2.bx.psu.edu/Admin/Tools/External%20Display%20Applications%20Tutorial And at the XML files in the directory: $GALAXY_ROOT/display_applications/ Thanks for using Galaxy, Dan On Aug 23, 2011, at 7:30 AM, shashi shekhar wrote: Hi All, I want to add my own Visualization tool in local instance of galaxy .how i will do it in galaxy ? i want to integrate jmol in galaxy. Regards shashi ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] collect_associated_files and umask
Chorny, Ilya wrote: When I run galaxy as the actual user using the code I committed to my fork, I run into a problem with dataset_*.dat files that have associated data wherein the associated data files are copied from the job_working_directory into the files directory. That directory is owned by the actual user and not by the galaxy user. I don't have a problem with the ownership but the permissions of the directory and associated files get changed to 777. Any thoughts on why the permissions get changed. The permissions are 755 and 644 for dirs and files respectively when in the working directory so why do they change when the directory is moved? Any help would be greatly appreciated. Hi Ilya, What's your umask on the command line? Galaxy tries to honor this umask if possible, see the collect_associated files method of the Tool class in lib/galaxy/tools/__init__.py. --nate Best, Ilya Ilya Chorny Ph.D. Bioinformatics - Intern icho...@illumina.commailto:icho...@illumina.com 858-202-4582 ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] [API] Get the hashed dataset id within Galaxy
Louise-Amélie Schmitt wrote: Hi, I would need to make a tool that can get the API dataset id out of the input dataset of the tool, how can I do that? Hi L-A, Pass in as an argument: $__app__.security.encode_id( 'file.%s' % $input1.id ) Where 'input1' is the param name of your input. --nate ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] database/files/_metadata_files
Hi Ilya, Tools should not ordinarily write to this directory, but will often read from it. These files are generated by Galaxy's Metadata functionality. If you are setting metadata externally (settings in universe_wsgi.ini) and using a cluster, then this will occur as part of the tool/job script, as a separate entry (calling set_metadata.sh) in the e.g. .sh file submitted to pbs. Certain filetypes, e.g. BAM and MAF, use these for storing index data. Thanks for using Galaxy, Dan On Aug 23, 2011, at 4:04 PM, Chorny, Ilya wrote: Can someone point me to a tool which writes to this directory? I made some changes to the code to run as actual user but cannot find a tools that writes to this directory. Thanks, Ilya Ilya Chorny Ph.D. Bioinformatics Scientist I Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Work: 858.202.4582 Email: icho...@illumina.com Website: www.illumina.com ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] multiple inputs in tools used in workflows?
While snooping around the Galaxy code, I noticed that some tool features are not supported in workflows, only in histories. Is there a list somewhere that lists the restrictions? Specifically, are multiple inputs supported? John Duddy Sr. Staff Software Engineer Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Tel: 858-736-3584 E-mail: jdu...@illumina.commailto:jdu...@illumina.com ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] database/files/_metadata_files
Great, thanks!! From: Daniel Blankenberg [mailto:d...@bx.psu.edu] Sent: Tuesday, August 23, 2011 1:26 PM To: Chorny, Ilya Subject: Re: [galaxy-dev] database/files/_metadata_files Run a tool (or auto-detect metadata) that creates any BAM or MAF output file. The file will originally be created in a temporary location and then moved into the final location in Galaxy's job finish methods. On Aug 23, 2011, at 4:20 PM, Chorny, Ilya wrote: I am setting metadata externally so how do I get a file to be generated in that directory? From: Daniel Blankenberg [mailto:d...@bx.psu.edu]mailto:[mailto:d...@bx.psu.edu] Sent: Tuesday, August 23, 2011 1:18 PM To: Chorny, Ilya Cc: galaxy-dev@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] database/files/_metadata_files Hi Ilya, Tools should not ordinarily write to this directory, but will often read from it. These files are generated by Galaxy's Metadata functionality. If you are setting metadata externally (settings in universe_wsgi.ini) and using a cluster, then this will occur as part of the tool/job script, as a separate entry (calling set_metadata.sh) in the e.g. .sh file submitted to pbs. Certain filetypes, e.g. BAM and MAF, use these for storing index data. Thanks for using Galaxy, Dan On Aug 23, 2011, at 4:04 PM, Chorny, Ilya wrote: Can someone point me to a tool which writes to this directory? I made some changes to the code to run as actual user but cannot find a tools that writes to this directory. Thanks, Ilya Ilya Chorny Ph.D. Bioinformatics Scientist I Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Work: 858.202.4582 Email: icho...@illumina.commailto:icho...@illumina.com Website: www.illumina.comhttp://www.illumina.com ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] What script updates the umask of database/files/* and deletes database/job_working_directory
When running as the actual user in drama, I made it so the .dat files are not initially created so that when a tool moves data from the a temp directory to the out .dat file it will not fail. (i.e. unix does not allow moving a file owned by one user to a file owned by another user because mv carries the attributes of the original file). Now I want to change the ownership of the files through a sudo call at the end. Which script is run at the end to clean things up? Thanks, Ilya Ilya Chorny Ph.D. Bioinformatics Scientist I Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Work: 858.202.4582 Email: icho...@illumina.commailto:icho...@illumina.com Website: www.illumina.comhttp://www.illumina.com ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Error uploading files through filesystem paths: MacOS, Postgres and galaxy-central
Camille Stephan wrote: Hello, I just installed postgres in my machine and things seem to work fine except for the Upload files from filesystems paths option which gives the following error: Invalid paths: /path/to/file.fasta The path is correct and I tried with different files and file formats. I have the most recent version from galaxy-central. Any idea what could be causing this? Hi Camille, Does the user running Galaxy have filesystem access to those files? --nate Thanks! Camille -- *** Camille Stephan-Otto Attolini, PhD Senior Research Officer, Bioinformatics and Biostatistics unit IRB Barcelona Tel (+34) 93 402 0553 ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] cant' run galaxy in daemon mode
sohk...@notes.cc.sunysb.edu wrote: Hi, I have the production Galaxy setup and running on Mac OS Leopard 10.6, with postgres and apache. However, I am unable to run it as daemon. I don't get an error, the browser just hangs there. Thanks for any advice. Hi Sohail, How are you starting the daemon? Have you checked the log file to see if there are any errors? If the Galaxy process has started correctly, have you checked to see if the system firewall is enabled? --nate -Sohail ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] How to get tool id in runner file (local.py)
shashi shekhar wrote: Hi, I have local instance of Galaxy and i am doing some modification in Galaxy .So i need tool id id in local.py file . How i will get this information in runner file (local.py). Hi Shashi, Anywhere you have the job_wrapper object, the Job ID can be accessed as: job_wrapper.job_id --nate Regards shashi shekhar ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] What script updates the umask of database/files/* and deletes database/job_working_directory
So I figured out that it is job/runners/__init__.py that does the cleanup. But now I can't figure out how to pass the galaxy username to my script to change the permission back. I thought os.getlogin() would give me the right username but it returns my user name and not the galaxy user. Thoughts? Thanks, Ilya From: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Chorny, Ilya Sent: Tuesday, August 23, 2011 1:46 PM To: galaxy-dev@lists.bx.psu.edu Subject: [galaxy-dev] What script updates the umask of database/files/* and deletes database/job_working_directory When running as the actual user in drama, I made it so the .dat files are not initially created so that when a tool moves data from the a temp directory to the out .dat file it will not fail. (i.e. unix does not allow moving a file owned by one user to a file owned by another user because mv carries the attributes of the original file). Now I want to change the ownership of the files through a sudo call at the end. Which script is run at the end to clean things up? Thanks, Ilya Ilya Chorny Ph.D. Bioinformatics Scientist I Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Work: 858.202.4582 Email: icho...@illumina.commailto:icho...@illumina.com Website: www.illumina.comhttp://www.illumina.com ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Metadata error
I get these two error in the log file. The job finishes correctly and a metadata file is created but I still get the error. Can anyone provide me with more detail about what this error means? The second error is incorrect because the files were deleted. setting metadata externally failed for HistoryDatasetAssociation 344: [Errno 1] Operation not permitted: '/mnt/data/galaxy/database/files/000' and Failed to cleanup MetadataTempFile temp files from ../../mnt/data/galaxy/database/tmp/metadata_out_HistoryDatasetAssociation_344_NUDu3A: No JSON object could be decoded: line 1 column 0 (char 0) Ilya Chorny Ph.D. Bioinformatics Scientist I Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Work: 858.202.4582 Email: icho...@illumina.commailto:icho...@illumina.com Website: www.illumina.comhttp://www.illumina.com ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
