Hello,
I am building a tool config, and I am looking for a way to have nested
conditionals being automatically selected based on a previous
conditional. Schematically it looks like this:
Choose: option 1 or option 2
if option 1: no extra parameters
if option 2: extra parameters to set
On Fri, Apr 13, 2012 at 1:00 AM, Aaron Gallagher agall...@fhcrc.org wrote:
Hi again,
I'm trying to set up a workflow for Galaxy (6799:40f1816d6857), but I can't
seem to find a way to make a workflow that invokes another workflow. It seems
like this wouldn't be unreasonable, since workflows
Yes, you do not have a url like http://some_path or ssh://some_path
defined in your config file. Look at the command-line options for
your routines and figure out how it is finding your config file. It
could be looking in the wrong place or you could have an error in the
config file (missing
I'm currently writing a Galaxy wrapper for RUM (RNA-seq Unified Mapper). RUM is
a tool that generates many output files. It is run from the command line using
the following syntax:
RUM_runner.pl config file reads file(s) output dir num chunks name
[options]
I'm good with everything except the
Hello,
Great work with the Galaxy on the Cloud - it's the first time I've used it and
it looks very impressive (and I'm not a big cloud fan :) ).
Once I got it working it was very nice, but before it worked I encountered two
issues (not sure if those were voodoo or not) that could be perhaps
Hello All,
I have just tried to import a workflow file and when I try to view the
workflow, I'm getting an error, global name 'self' is not defined.
Error Traceback:
View as:
Interactivehttp://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#
(full)
Hello All,
I'm pretty sure I found a bug in the main galaxy distribution. The
following code diff shows the introduction of the line
tool_version = self.__get_tool_version( trans, tool_id )
but if you look at the function definition containing that line, you see
def from_workflow_step( Class,
