Hello All, I have just tried to import a workflow file and when I try to view the workflow, I'm getting an error, "global name 'self' is not defined".
Error Traceback: View as: Interactive<http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> (full) <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> | Text <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> (full) <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> | XML <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> (full) <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> ⇝ NameError: global name 'self' is not defined clear this clear this URL: http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e Module weberror.evalexception.middleware:*364* in respond <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> view <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> << <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> *try**:* __traceback_supplement__ *=* errormiddleware*.*Supplement*,* self*,* environ app_iter *=* self*.*application*(*environ*,* detect_start_response*)* *try**:* return_iter *=* list*(*app_iter*)*>> <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#>app_iter *=* self*.*application*(*environ*,* detect_start_response*)* Module paste.debug.prints:*98* in __call__ <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> view <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> << <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> *try**:* status*,* headers*,* body *=* wsgilib*.*intercept_output*(* environ*,* self*.*app*)* *if* status *is* None*:* # Some error occurred>> <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#>environ*, * self*.*app*)* Module paste.wsgilib:*539* in intercept_output <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> view <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> << <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> data.append(headers) return output.write app_iter = application(environ, replacement_start_response) if data[0] is None: return (None, None, app_iter)>> <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#>app_iter *=* application*(*environ*,* replacement_start_response*)* Module paste.recursive:*80* in __call__ <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> view <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> << <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> environ*[*'paste.recursive.script_name'*]* *=* my_script_name *try**:* *return* self*.*application*(*environ*,* start_response*)* *except* ForwardRequestException*,* e*:* middleware *=* CheckForRecursionMiddleware*(*>> <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#>*return* self*.*application*(*environ*,* start_response*)* Module paste.httpexceptions:*632* in __call__ <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> view <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> << <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> *[**]**)**.*append*(*HTTPException*)* *try**:* *return* self*.*application*(*environ*,* start_response*)* *except* HTTPException*,* exc*:* *return* exc*(*environ*,* start_response*)*>> <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#>*return* self*.*application*(*environ*,* start_response*)* Module galaxy.web.framework.base:*160* in __call__ <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> view <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> << <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> kwargs*.*pop*(* '_'*,* None *)* *try**:* body *=* method*(* trans*,* ****kwargs *)* *except* Exception*,* e*:* body *=* self*.*handle_controller_exception*(* e*,* trans*,* ****kwargs *)*>> <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#>body *=* method*(* trans*,* ****kwargs *)* Module galaxy.web.controllers.workflow:*207* in display_by_id <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> view <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> << <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> # Get workflow. stored_workflow = self.get_stored_workflow( trans, id ) return self.display(trans, stored_workflow) def display(self, trans, stored_workflow):>> <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#>*return* self*.*display*(*trans*,* stored_workflow*)* Module galaxy.web.controllers.workflow:*217* in display <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> view <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> << <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> # Get data for workflow's steps. self*.*get_stored_workflow_steps*(* trans*,* stored_workflow *)* # Get annotations. stored_workflow*.*annotation *=* self*.*get_item_annotation_str* (* trans*.*sa_session*,* stored_workflow*.*user*,* stored_workflow *)*>> <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#>self*.* get_stored_workflow_steps*(* trans*,* stored_workflow *)* Module galaxy.web.base.controller:*418* in get_stored_workflow_steps <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> view<http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> << <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> *if* step*.*type *==* 'tool' *or* step*.*type *is* None*:* # Restore the tool state for the step module *=* module_factory*.*from_workflow_step*(* trans* ,* step *)* #Check if tool was upgraded step*.*upgrade_messages *=* module*.* check_and_update_state*(**)*>> <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#>module *= * module_factory*.*from_workflow_step*(* trans*,* step *)* Module galaxy.workflow.modules:*369* in from_workflow_step <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> view <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> << <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> """ type = step.type return self.module_types[type].from_workflow_step( trans, step ) module_factory = WorkflowModuleFactory( dict( data_input=InputDataModule, tool=ToolModule ) )>> <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#>*return* self*.*module_types*[*type*]**.*from_workflow_step*(* trans*,* step *)* Module galaxy.workflow.modules:*202* in from_workflow_step <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> view <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> << <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> # in addition to tool id, enhance the selection process here # to retrieve the correct version of the tool. tool_version *=* self*.*__get_tool_version*(* trans*,* tool_id *)* *if* tool_version*:* tool_version_ids *=* tool_version*.*get_version_ids*(* trans*.*app *)*>> <http://127.0.0.1:8080/workflow/display_by_id?id=f2db41e1fa331b3e#> tool_version *=* self*.*__get_tool_version*(* trans*,* tool_id *)* *NameError: global name 'self' is not defined* Thankyou in advance for any help that you can give. -Rob
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