Re: [galaxy-dev] Missing test results on (Test) Tool Shed

2013-05-27 Thread Peter Cock
On Wed, May 22, 2013 at 8:05 PM, Peter Cock p.j.a.c...@googlemail.com wrote: On Wed, May 22, 2013 at 6:47 PM, Dave Bouvier d...@bx.psu.edu wrote: Peter, I have implemented a system that will explicitly exclude a defined list of repositories from the testing framework, so your repositories'

Re: [galaxy-dev] Displaying BED files in IGV

2013-05-27 Thread menorca chaturvedi
Hello, I am trying to use IGV on local Galaxy to view BED and other kinds of files. I added the xml file and made changes in the datatypes_conf.xml file too but the error says: Unable to parse header with error: File not found:..for input source.. The same file works for IGB though. Please

[galaxy-dev] login to ftp server failed

2013-05-27 Thread Barbara Susanne Sixt
Hello, I am completely new to Galaxy and I am not quite sure to which mailing list this question should have been addressed. I apologize if I got it wrong. I created an account one week ago and tried to upload data via ftp (using WinSCP). However logging in to the ftp server at

[galaxy-dev] pre-commit hook for easier deployment of complex repository definitions

2013-05-27 Thread Björn Grüning
Hello all, in the same spirit of Ira's galaxy_repo_bundler [1] I have uploaded my mercurial pre-commit hook: https://github.com/bgruening/galaxy-toolshed-hooks It integrates in mercurial and (in an ideal world ;)) should not interfere with your normal workflow. The two hooks will: - creates a