Hey guys,
we have a problem in our local galaxy instance (10392:1ae95b3aa98d
release_2013.08.12) using bcftools (Version: 0.1.19-44428cd) from the tool shed
to convert our bcf files into vcf.
With bcf files less than ~ 3 GB everything works fine, but above that (we have
a 13gb bcf file), the
Hi Starr,
I'd suggest setting 'retry_job_output_collection' in universe_wsgi.ini
to some value 0 (e.g. 5). You may also want to try remounting the
filesystem on which your working directories are located with the
`-noac` temporarily just to rule out that the problem is related to
attribute
Hello,
I am currently unable to install a number of tools from toolshed to our
cloud instance. Unfortunately, this pops up for quite a few tools (I am
currently trying to install cuffmerge, but I see this again and again).
Any help would be appreciated!
I am seeing the following error:
URL:
Hello,
I am unable to reach my cloudman console. I was trying to reboot the
master. The instance is running on AWS console with no error, I just have
no way of access the admin console to terminate or figure out the error
through cloud launch. Further, I am now unable to launch a new
Hello,
Thank you very much for the quick answers.
There were very useful.
Now I hope I'm not bothering you with a couple more questions.
I read more thoroughly the documentation for installing a production
environment and I was wondering:
1. Is it possible to run the web server through
Hi Karen,
that bug was fixed. Can you update your Galaxy installation?
Cheers,
Bjoern
Hello,
I am currently unable to install a number of tools from toolshed to
our cloud instance. Unfortunately, this pops up for quite a few tools
(I am currently trying to install cuffmerge, but I see
Hi Greg,
thanks for looking at this!
Unfortunately still no test results displayed for
http://toolshed.g2.bx.psu.edu/view/crs4/blat
Best,
Nicola
Il giorno mar, 10/12/2013 alle 10.43 -0500, Greg Von Kuster ha scritto:
Hello Nicola,
The main tool shed is running a bit behind the test tool
Hello, Edgar - thanks for installing Galaxy!
Regarding the screenshots: it looks like Galaxy's static css stylesheet
isn't being loaded properly. Is this still occurring for you? Do you see
anything when you try to go to http://localhost:8080/static/style/base.css
in your browser? (You should see
Hi,
It would be appreciated if you have time to complete this survey.
I set up a simple survey and would greatly appreciate if instance admin
would take 2 min to complete it. I will publish results here (or maybe to
some more relevant place, let me know) at the end of the month.
