[galaxy-dev] Choosing between pre-existing file or user-defined file as tool input

2012-09-17 Thread Makis Ladoukakis
in the configuration file? Thank you in advance, Makis Ladoukakis ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please

Re: [galaxy-dev] Choosing between pre-existing file or user-defined file as tool input

2012-09-17 Thread Makis Ladoukakis
: Failed to open txt file test_17_Sep_2012 for reading. I have used chmod 777 for my file but the issue still persists. Can you help me please? What could be the problem. Thank you in advance, Makis Ladoukakis Date: Mon, 17 Sep 2012 13:30:34 +0100 Subject: Re: [galaxy-dev] Choosing between pre

Re: [galaxy-dev] Tools won't go away even after deleting it from tool_conf.xml

2012-09-06 Thread Makis Ladoukakis
Hence, try deleting integrated_tool_panel.xml first before you do a restart. Regards, Hans On 09/06/2012 01:29 PM, Makis Ladoukakis wrote: Dear Galaxy users, Has anyone experienced this problem before? In my local instance of Galaxy on a server I've deleted the path of almost all

[galaxy-dev] Update Galaxy instance with Mercurial error

2012-07-31 Thread Makis Ladoukakis
of the server has downloaded the Galaxy-dist directory without the use of Mercurial (I was suspicious of that all along as the directory of the Galaxy installation is named galaxy_dist and not galaxy-dist). Is there another way to update my instance? Thank you, Makis Ladoukakis

[galaxy-dev] Using quota won't decrease

2012-04-10 Thread Makis Ladoukakis
directory. Has anyone encountered this sort of problem before? Thank you in advance, Makis Ladoukakis ___ Please keep all replies on the list by using reply all in your mail client. To manage your

[galaxy-dev] Galaxy loading never ends

2012-04-04 Thread Makis Ladoukakis
before? Thank you in advance, Makis Ladoukakis ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use

Re: [galaxy-dev] Problem uploading files from filesystem paths

2011-12-21 Thread Makis Ladoukakis
Seems like an error concerning permissions in your galaxy folders. Try: sudo chmod 777 galaxy-dist/ and then try to upload data again. To: galaxy-...@bx.psu.edu From: liisa.ko...@dnalandmarks.ca Date: Tue, 20 Dec 2011 16:22:02 -0500 Subject: [galaxy-dev] Problem uploading files from filesystem

[galaxy-dev] Data upload from a server

2011-12-15 Thread Makis Ladoukakis
Dear Galaxy developers, I have installed a Galaxy local instance on our university's server and I am going to use it to analyze data also uploaded on the same server. Nevertheless the access to the server (and the data) is limited only to those involved with the project so making public

[galaxy-dev] Data upload from a server

2011-12-15 Thread Makis Ladoukakis
Dear Galaxy developers, I have installed a Galaxy local instance on our university's server and I am going to use it to analyze data also uploaded on the same server. Nevertheless the access to the server (and the data) is limited only to those involved with the project so making public urls

Re: [galaxy-dev] New tool not recognised unless i reboot

2011-12-14 Thread Makis Ladoukakis
...@googlemail.com To: makis4e...@hotmail.com CC: galaxy-dev@lists.bx.psu.edu 2011/12/14 Makis Ladoukakis makis4e...@hotmail.com: Dear galaxy users, I have downloaded a local instance of Galaxy on my linux distribution (ubuntu) and i am adding new tools i made myself. To add a new tool i follow