Hi,
For testing I have installed custom tool A and its repository dependency
custom tool B. Actually as per the implementation there is no dependency
among these two custom tools. But in general if we want to access a tool
inside another tool implementation how should I do that.
Can you please
Hi,
Did anyone faced this issue ?. I struck here. Please suggest me.
Thanks,
JanakiRam
On Wed, Apr 2, 2014 at 3:10 PM, Janaki Rama Rao Gollapudi
janakiram.gollap...@india.semanticbits.com wrote:
Hi,
I have implemented a custom tool called 'barcode-parse' and uploaded this
custom
03.04.2014 09:05, schrieb Janaki Rama Rao Gollapudi:
Hi,
Did anyone faced this issue ?. I struck here. Please suggest me.
Thanks,
JanakiRam
On Wed, Apr 2, 2014 at 3:10 PM, Janaki Rama Rao Gollapudi
janakiram.gollap...@india.semanticbits.com wrote:
Hi,
I have implemented a custom
Hi Bjoern,
I also exported both the repositories from local toolshed. Please find the
attached files.
Thanks,
JanakiRam
On Thu, Apr 3, 2014 at 12:50 PM, Janaki Rama Rao Gollapudi
janakiram.gollap...@india.semanticbits.com wrote:
Hi,
Thanks for quick reply. Please find the attached .tar
a repository dependency, I think that is not needed
or?
This is the first time I working with repository dependencies, so
for testing I am trying to add simple repository dependency to my custom
tool.
Cheers,
Bjoern
Am 03.04.2014 09:30, schrieb Janaki Rama Rao Gollapudi:
Hi Bjoern
03.04.2014 12:01, schrieb Janaki Rama Rao Gollapudi:
Hi Bjoern,
Please see my comments inline.
On Thu, Apr 3, 2014 at 3:14 PM, Björn Grüning bjoern.gruen...@gmail.com
wrote:
Hi Janaki,
can you try to remove this prior_installation_required completely?
I didn't added
a wrong syntax inside the
repository_dependecies.xml file. Imho prior_installation_required does
not make sense in repository_dependencies.xml or? Is that an bug?
JanakiRam can you confirm my summary?
Thanks,
Bjoern
Am 03.04.2014 12:49, schrieb Janaki Rama Rao Gollapudi:
Hi,
I am using
:49, schrieb Janaki Rama Rao Gollapudi:
Hi,
I am using latest checkout from
https://bitbucket.org/galaxy/galaxy-dist/(Just now I also updated my
local galaxy code base). Yes, without
repository dependency everything working fine.
Thanks,
JanakiRam
On Thu, Apr 3, 2014 at 3
Kuster
On Apr 3, 2014, at 9:53 AM, Janaki Rama Rao Gollapudi
janakiram.gollap...@india.semanticbits.com wrote:
Thanks Greg, I will verify with new changes.
Thanks,
JanakiRam
On Thu, Apr 3, 2014 at 7:05 PM, Greg Von Kuster g...@bx.psu.edu wrote:
Hello Janaki and Björn,
This problematic
Hi,
I have implemented a custom tool called 'barcode-parse' and uploaded this
custom to into my local tool shed(which is running at http://localhost:9009).
Also able to install this custom tool from galaxy.
Then I have added simple repository dependency. I have created a xml file
=MyBarcodeProjectisTSS/
output name=output file=path to test-data
directory/barcode-parse-ouput3.txt/
/test
/tests
Thanks for all your help.
Thanks,
JanakiRam
On Fri, Mar 28, 2014 at 2:39 PM, Janaki Rama Rao Gollapudi
janakiram.gollap...@india.semanticbits.com wrote:
Hi,
I have gone through the resources
Hi,
I have implemented a custom tool which will parse a given string in to
expected format. Installed this custom tool into galaxy and was able to run
successfully.
I would like to add test cases to this tool, can you please provide me
resources to write test cases for this custom tool.
Is this
Hi,
I found below resources:
- Running
testhttps://wiki.galaxyproject.org/Admin/RunningTests?action=showredirect=Admin%2FRunning+Tests
- Writing Functional
testshttps://wiki.galaxyproject.org/Admin/Tools/Writing%20Tests
Thanks,
JanakiRam
On Thu, Mar 27, 2014 at 2:53 PM, Janaki Rama
=output.txt/
/test
/tests
..
Thanks,
G.JanakiRam
On Thu, Mar 27, 2014 at 3:27 PM, Janaki Rama Rao Gollapudi
janakiram.gollap...@india.semanticbits.com wrote:
Hi,
I found below resources:
- Running
testhttps://wiki.galaxyproject.org/Admin/RunningTests
wrote:
As Janaki replied below, see:
http://wiki.galaxyproject.org/Admin/RunningTests?action=showredirect=Admin%2FRunning+Tests
On Mar 27, 2014, at 7:15 AM, Janaki Rama Rao Gollapudi
janakiram.gollap...@india.semanticbits.com wrote:
Hi,
I have added tests to tool dependency xml, but how
Kuster
On Mar 27, 2014, at 8:58 AM, Janaki Rama Rao Gollapudi
janakiram.gollap...@india.semanticbits.com wrote:
Hi,
Thanks for reply. I composed a details email for better clarity.
when run grep command in galaxy home folder ( ./run_functional_tests.sh
-list | grep barcode-parse), I got
the unified search at:
http://galaxyproject.org/search/mailinglists/
-- Forwarded message --
From: Janaki Rama Rao Gollapudi
janakiram.gollap...@india.semanticbits.com
To: galaxy-u...@lists.bx.psu.edu
Cc:
Date: Mon, 24 Mar 2014 20:49:15 +0530
Subject: Reg: Creating a private
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