On 3/17/11 10:01 PM, Jeremy Goecks wrote:
ok - I managed to compile cufflinks myself. When I run it I get a line of output that
reads linked against Boost version 104601. When I run cufflinks in Galaxy,
Galaxy complains about this line being an error.
Hmmm. How is cufflinks running in
It looks like the output only occurs when cufflinks can't run on the
provided dataset. I checked my inputs, and I think that is the
problem...its a sam file from bowtie, not from tophat, hence not a sorted
sam file. Perhaps this stderr message doesn't matter after all, its just
Hi all - I'm running Galaxy on my Redhat linux cluster. When I run
cufflinks from the shell I get the error/warning:
cufflinks: /usr/lib64/libz.so.1: no version information available
(required by cufflinks)
but it still seems to run ok. It looks like Galaxy is choking on this.
I tried
Hi all - I'm running Galaxy on my Redhat linux cluster. When I run
cufflinks from the shell I get the error/warning:
cufflinks: /usr/lib64/libz.so.1: no version information available (required
by cufflinks)
but it still seems to run ok. It looks like Galaxy is choking on this. I
tried
