Re: [galaxy-dev] Pick-you-own columns in BLAST+ tabular output

2014-03-14 Thread Peter Cock
On Tue, Mar 4, 2014 at 12:19 PM, Peter Cock wrote: > On Tue, Mar 4, 2014 at 10:35 AM, Björn Grüning > wrote: >> Hi Peter, >> >>> Hello all, >>> >>> I've mentioned before that a forthcoming update to the BLAST+ >>> Galaxy wrappers would be adding a most customisable output >>> option with pick-yo

Re: [galaxy-dev] Pick-you-own columns in BLAST+ tabular output

2014-03-04 Thread Peter Cock
On Tue, Mar 4, 2014 at 10:35 AM, Björn Grüning wrote: > Hi Peter, > >> Hello all, >> >> I've mentioned before that a forthcoming update to the BLAST+ >> Galaxy wrappers would be adding a most customisable output >> option with pick-your-own columns. This is available to test now >> from the Test T

Re: [galaxy-dev] Pick-you-own columns in BLAST+ tabular output

2014-03-04 Thread Björn Grüning
Hi Peter, Hello all, I've mentioned before that a forthcoming update to the BLAST+ Galaxy wrappers would be adding a most customisable output option with pick-your-own columns. This is available to test now from the Test Tool Shed, along with other enhancements like more masking tools and an up

Re: [galaxy-dev] Pick-you-own columns in BLAST+ tabular output

2014-01-17 Thread Peter Cock
On Fri, Jan 17, 2014 at 8:34 AM, Bossers, Alex wrote: > Peter, > We will definitely give them a try. Great. > > I never understood why the tabular outputs did have an option to include > the defline/hit decryption. That was a long standing gripe of mine too, fixed in BLAST+ 2.2.28 and availabl

Re: [galaxy-dev] Pick-you-own columns in BLAST+ tabular output

2014-01-17 Thread Bossers, Alex
numbers. But either is fine with us. Alex -Oorspronkelijk bericht- Van: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-boun...@lists.bx.psu.edu] Namens Peter Cock Verzonden: woensdag 15 januari 2014 11:54 Aan: galaxy-dev@lists.bx.psu.edu Onderwerp: [galaxy-dev] Pick-you-own

[galaxy-dev] Pick-you-own columns in BLAST+ tabular output

2014-01-15 Thread Peter Cock
Hello all, For those interested in more flexible tabular output from BLAST+, please try out the wrappers on the *Test* Tool Shed which I have also just updated to wrap BLAST+ 2.2.29 as well: http://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus One open question is should the interface