Hi JanakiRam,
galaxy-dist is the stable version of Galaxy and galaxy-central is the
development version. But you can also track galaxy-central and the
stable branch as I do. Galaxy-central [stable] should be the same as
galaxy-dist in theory. In practise galaxy-central [stable] get more
Hello Björn,
I've enhanced the error message displayed in 12959:64d677b1e16a, which is
available in the next-stable branch, so it will be included in the upcoming
release. This message is tricky, because it is only displayed when visiting
the Tool Shed from Galaxy to install a repository that
Hi,
Did anyone faced this issue ?. I struck here. Please suggest me.
Thanks,
JanakiRam
On Wed, Apr 2, 2014 at 3:10 PM, Janaki Rama Rao Gollapudi
janakiram.gollap...@india.semanticbits.com wrote:
Hi,
I have implemented a custom tool called 'barcode-parse' and uploaded this
custom to into
This all seems to be fine, can you send me a tarball with both
repositories ...
Thanks,
Bjoern
Am 03.04.2014 09:05, schrieb Janaki Rama Rao Gollapudi:
Hi,
Did anyone faced this issue ?. I struck here. Please suggest me.
Thanks,
JanakiRam
On Wed, Apr 2, 2014 at 3:10 PM, Janaki Rama Rao
Hi,
Thanks for quick reply. Please find the attached .tar file of both the
repositories.
Thanks,
JanakiRam
On Thu, Apr 3, 2014 at 12:45 PM, Björn Grüning bjoern.gruen...@gmail.comwrote:
This all seems to be fine, can you send me a tarball with both
repositories ...
Thanks,
Bjoern
Am
Hi Bjoern,
I also exported both the repositories from local toolshed. Please find the
attached files.
Thanks,
JanakiRam
On Thu, Apr 3, 2014 at 12:50 PM, Janaki Rama Rao Gollapudi
janakiram.gollap...@india.semanticbits.com wrote:
Hi,
Thanks for quick reply. Please find the attached .tar
Hi Janaki,
can you try to remove this prior_installation_required completely?
Also why do you need a repository dependency, I think that is not needed or?
Cheers,
Bjoern
Am 03.04.2014 09:30, schrieb Janaki Rama Rao Gollapudi:
Hi Bjoern,
I also exported both the repositories from local
Hi Bjoern,
Please see my comments inline.
On Thu, Apr 3, 2014 at 3:14 PM, Björn Grüning bjoern.gruen...@gmail.comwrote:
Hi Janaki,
can you try to remove this prior_installation_required completely?
I didn't added 'prior_installation_required' in the
repository_dependencies.xml(as
Hi,
I just tested it in the test-toolshed and for me
'prior_installation_required' is not inserted. Which Galaxy version do
you use? Please note, that I'm not sure if that is really causing the
trouble you have seen.
If you remove the repository dependency everything is working as expected?
Hi,
I am using latest checkout from
https://bitbucket.org/galaxy/galaxy-dist/(Just now I also updated my
local galaxy code base). Yes, without
repository dependency everything working fine.
Thanks,
JanakiRam
On Thu, Apr 3, 2014 at 3:39 PM, Björn Grüning bjoern.gruen...@gmail.comwrote:
Hi,
Hi JanakiRam,
I will take Greg into CC. He is the main Tool Shed developer, maybe we
spotted a bug in populating prior_installation_required in
repository_dependencies.xml file. He probably knows if that is supposed
to work.
Greg, to summarize our findings. It seems that if JanakiRam
Hi,
Bjoern, Yes the summary looks correct.
Greg, I have added tool_dependencies.xml to the same custom tool and
installed it successfully in my local galaxy. But If I add
repository_dependencies.xml to my custom tool and try to install the tool,
then galaxy showing an error message that the
Yes, if that is the behavior, that is definitely a bug. I'll take a look and
get back to you on this.
Thanks!
On Apr 3, 2014, at 7:35 AM, Björn Grüning bjoern.gruen...@gmail.com wrote:
Hi JanakiRam,
I will take Greg into CC. He is the main Tool Shed developer, maybe we
spotted a bug in
Hello Janaki and Björn,
This problematic behavior is a result of a bug in the repository export process
which has been fixed in the following changeset which is currently available in
the Galaxy central repo. Thanks very much for reporting this.
Thanks Greg, I will verify with new changes.
Thanks,
JanakiRam
On Thu, Apr 3, 2014 at 7:05 PM, Greg Von Kuster g...@bx.psu.edu wrote:
Hello Janaki and Björn,
This problematic behavior is a result of a bug in the repository export
process which has been fixed in the following changeset
I should have handled the import in the same commit, but did so in the
following changeset. It will eliminate the problematic
prior_installation_required=False attribute from the repository tag when a
capsule is being imported.
changeset: 12944:59bd7349a128
tag: tip
user:
Hi Greg/Bjoern,
Thanks for all your help. I checkout the galaxy-central code
base(previously I am using galaxy-dist code base) and uploaded my custom
tool(with both tool and repository dependency) in to toolshed and also
installed custom tool from galaxy. The dependency tool also installed
Hi,
I have implemented a custom tool called 'barcode-parse' and uploaded this
custom to into my local tool shed(which is running at http://localhost:9009).
Also able to install this custom tool from galaxy.
Then I have added simple repository dependency. I have created a xml file
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