[galaxy-dev] uWSGI threading issue

Dear developers, Since last Galaxy upgrade some issue with uwsgi and threading arise. I used Galaxy documentation as a guideline to configure galaxy.yml: uwsgi: socket: 127.0.0.1:4001 http: 0.0.0.0:8080 buffer-size: 16384

Re: [galaxy-dev] Urgent help needed

?That's what I wanted to hear! Thanks a lot once again. Best, Marija Von: Nate Coraor <n...@bx.psu.edu> Gesendet: Donnerstag, 19. Oktober 2017 18:59 An: Durdevic, Marija Cc: galaxy-dev@lists.galaxyproject.org Betreff: Re: [galaxy-dev] Urgent help needed

Re: [galaxy-dev] Urgent help needed

t;n...@bx.psu.edu> Gesendet: Donnerstag, 19. Oktober 2017 18:36 An: Durdevic, Marija Cc: galaxy-dev@lists.galaxyproject.org Betreff: Re: [galaxy-dev] Urgent help needed Hi Marija, Wow, sorry to hear this. If the datasets themselves were removed, it's unlikely there'd be a way to get them back

[galaxy-dev] Urgent help needed

Dear developers, The colleague of mine mistakenly deleted my Galaxy installation (rm -rf *). Unfortunately there is no backup of complete installation. I have backup only configuration files. Is there any chance to fetch new Galaxy instance from git and to connect it to the old database? Or

Re: [galaxy-dev] Resource temporarily unavailable

maybe or some Galaxy-Slurm configuration? Best, Marija Von: Nicola Soranzo [mailto:nicola.sora...@gmail.com] Im Auftrag von Nicola Soranzo Gesendet: Montag, 23. Jänner 2017 17:17 An: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org> Betre

[galaxy-dev] Resource temporarily unavailable

Dear developers, >From time to time I have issue on my Galaxy server. The problem is when job is >done and results has to be written to the database something happened. The >error message is: "/home/data/galaxy_database/files/024/dataset_24790.dat: >Resource temporarily unavailable" where

[galaxy-dev] Recommended Hardware for Galaxy

Dear all, In our Center for Medical Research we installed Galaxy server for our researchers. We are running Galaxy on login node (Virtual Machine) and job execution is on cluster configured using SLURM. In Galaxy configuration we are using Supervisor-uWSGI-Nginx and two handlers. We are facing

Re: [galaxy-dev] LDAP authentification

Soranzo Sent: Wednesday, June 01, 2016 4:21 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification What is your LDAP server software? OpenLDAP or something else? Cheers, Nicola On 01/06/16 15:14, Durdevic, Marija wrote: > No, I got the s

Re: [galaxy-dev] LDAP authentification

/ldap.html#ldap.LDAPObject.whoami_s Can you check (or have your sysadmins check) the logs of the eDirectory server? I don't have any other idea, sorry! Cheers, Nicola On 02/06/16 09:24, Durdevic, Marija wrote: > Hi Nicola, > > The server is eDirectory. But this should not have any effect on LDA

Re: [galaxy-dev] LDAP authentification

No, I got the same error message :( -Original Message- From: Nicola Soranzo [mailto:nicola.sora...@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 4:11 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification Hi

Re: [galaxy-dev] LDAP authentification

8 bytes in 101 msecs (HTTP/1.1 200) 2 headers in 73 bytes (1 switches on core 0) -Original Message- From: Nicola Soranzo [mailto:nicola.sora...@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 2:56 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re:

Re: [galaxy-dev] LDAP authentification

} localdb true And Thank you for your help. Regards, Marija From: Nicola Soranzo [mailto:nicola.sora...@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 12:47 PM To: Durdevic, Marija; galaxy-dev

[galaxy-dev] LDAP authentification

Can someone please be so kind to post auth_conf.xml file with all changes. I am trying to setup it, but unsuccessfully. Thanks in advance. Regards, Marija Mag. Marija Đurđević Core Facility Computational Bioanalytics Medical University of Graz Center for Medical Research Stiftingtalstraße 24,

[galaxy-dev] SFTP settings

Is there anyone who manage to setup SFTP for Glaxay and that can help me please??? ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use

[galaxy-dev] sftp over proftpd and postgresql

Dear all, I am trying to setup sftp connection for my new Galaxy server. I managed to configure sftp_module and I am able to connect to the server as an system user. The problem is that I am not able to login there as Galaxy user. I guess that the problem is with settings for backend and

Re: [galaxy-dev] Proper Galaxy Installation

- From: Sebastian Schaaf [mailto:sch...@ibe.med.uni-muenchen.de] Sent: Monday, May 09, 2016 2:27 PM To: Durdevic, Marija Cc: galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] Proper Galaxy Installation Dear Marija, I would recommend to google for the "ngs-fablab" - there are t