Hi all,
We would like to invite you to our Galaxy DevOps Workshop in
Heidelberg from 6-7 of April, organised by de.NBI and ELIXIR.
The workshop is intended for Bioinformaticians who want to
* learn the internals of the multi-omics Galaxy workbench
* learn how to set up and run a Galaxy server
*
The instances get launched here:
https://github.com/galaxyproject/cloudman/blob/master/cm/clouds/ec2.py#L434
I guess you're talking about the `instance_profile_name` parameter from
boto's run_instances method (
https://github.com/boto/boto/blob/develop/boto/ec2/connection.py#L738)?
On Tue, Mar 15
Hi Lance,
Dave Bouvier removed the unwanted folder on the TS side. (It wasn't ever
tracked by mercurial). You should be ok now.
Sorry for the inconvenience.
Thank you for using Galaxy.
Martin
On Tue, Mar 15, 2016 at 5:41 PM Lance Parsons
wrote:
> When I clone the repo, I don't see that folde
Yeah - your discoveries are exactly right. 16.04 has added the ability
to configure a bunch of extra things on a per-job-destination basis
but this isn't included yet - probably should be though. Pulsar would
be a way to go - hopefully soon Pulsar will be included with Galaxy
directly and it will b
Thanks Damion
We've got the collectl based metric collection stuff working and that dumps
data in the Galaxy DB (which you can pull out using the API).
Thanks,
Peter
On 17 March 2016 at 10:45, Dooley, Damion wrote:
> If you are looking for a simple python program to log cpu% and memory of
> an
The repo is empty, so there is nothing to delete at this stage. And I can't
figure out how to delete the thing entirely.
I looked at the splitFasta tool, and also the splitfasta tool from rnateam
(in the test toolshed) and these split into 1 file for each sequence as
opposed to a certain number of
Hello
I'm trying to set up a form within Galaxy to collect some user info at
registration time. The only documentation I've found on this
functionality is:
https://wiki.galaxyproject.org/Admin/Config/User%20Information
which seems to be precisely what I need.
However I can't make this work
Hello Peter,
you are right, this seems broken, sorry about that.
I have created an issue to track the resolution of this bug:
https://github.com/galaxyproject/galaxy/issues/1937
Thank you for reporting it.
Martin
On Wed, Mar 16, 2016 at 10:16 AM Peter Briggs
wrote:
> Hello
>
> I'm trying to s
Hi,
We got a problem with the new version of Data libraries. When we upload
a fastq file from a User Directory, a tabulation character is added in
the header in replacement of a space character.
from @HWI-D00395:188:HYGNFADXX:2:1108:1315:1965 1:N:0:ATGAGC to
@HWI-D00395:188:HYGNFADXX:2:1108:
Hi Martin
Thanks for taking a look and confirming that it's not just me.
I've subscribed to the github issue and if I get a chance I'll try and
investigate some more myself.
Thanks again, best wishes
Peter
On 16/03/16 16:40, Martin Čech wrote:
Hello Peter,
you are right, this seems broken
Hey guys, today I updated to the latest version of galaxy. No I noticed
that because of the new virtualenv/wheel startup procedure, the init
scripts as mentioned here
https://wiki.galaxyproject.org/Events/GCC2012/TrainingDay/WS5?highlight=%28init.d%29
are not working anymore. Whet is the new start
If you are looking for a simple python program to log cpu% and memory of
another executable, then analyze.py might do. Its in
https://github.com/Public-Health-Bioinformatics/kipper/tree/master/RDP-test
-case along with a few scripts that show examples of its use.
Damion
>>
>> On 02/21/2016 11:13
12 matches
Mail list logo
