Re: [galaxy-dev] package_cython_0_20_1

2016-07-15 Thread Philipp Rathert 
Cool thanks that was quick…

 

From: Nicola Soranzo [mailto:nicola.sora...@gmail.com] On Behalf Of Nicola 
Soranzo
Sent: Friday, July 15, 2016 3:24 PM
To: Rathert, Philipp, Dr. ; 
galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] package_cython_0_20_1

 

Hi Philipp,
I have updated the package on the ToolShed, can you try to update it on your 
local Galaxy and reinstall the dependency?

Cheers,
Nicola

On 15/07/16 12:24, Rathert, Philipp, Dr. wrote:

Dear all,







I am trying to install package_cython_0_20_1 but I always get the following 
error.





It looks like the link is broken.





Any ideas how to get this installed?











Thanks for the help.





Cheers,







Philipp


















Name

Version

Type

Status

Error


cython 

 

0.20.1

package

Error

  File "lib/tool_shed/galaxy_install/install_manager.py", line 124, in 
install_and_build_package_via_fabric
tool_dependency = self.install_and_build_package( install_environment, 
tool_dependency, actions_dict )
  File "lib/tool_shed/galaxy_install/install_manager.py", line 82, in 
install_and_build_package
initial_download=True )
  File 
"lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py", line 
31, in execute_step
initial_download=initial_download )
  File "lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", 
line 688, in execute_step
dir = self.url_download( work_dir, downloaded_filename, url, extract=True, 
checksums=checksums )
  File "lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", 
line 184, in url_download
raise Exception( err_msg )

Error downloading from URLhttp://cython.org/release/Cython-0.20.1.tar.gz
:
HTTP Error 404: Not Found






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Re: [galaxy-dev] Docker for Mac

2016-06-29 Thread Philipp Rathert 
Hi Hans-Rudolph,

This means you use 

Docker pull bgruening/galaxy-stable:latest to get the image?

 

I just noticed that the “latest” image is 6 weeks old and the other only 9 days…

 

Anyway, I will try if the problems occur with the old one as well. 

 

Did you ever tried to use Docker for mac in a production mode, if yes any idea 
how to allow acces from other computers in the network?

 

Cheers,

 

Philipp

 

From: Hans-Rudolf Hotz [mailto:hansrudolf.h...@fmi.ch] 
Sent: Wednesday, June 29, 2016 3:50 PM
To: Rathert, Philipp, Dr. 
Cc: galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] Docker for Mac

 

Hi Philipp

 

I have successfully used "Docker for Mac (beta)” on 10.11.5, but I have always 
used the traditional location for the image to fetch from: 
https://index.docker.io/u/bgruening/galaxy-stable/   (i.e just following the 
excellent recipes on https://github.com/bgruening/docker-galaxy-stable )

 

and just by coincidence:  last night I tried ' 
 quay.io/bgruening/galaxy:16.04' and it 
didn’t work, but I haven’t  investigated why….

 

Hans-Rudolf

 

 

On 29 Jun 2016, at 10:23, Rathert, Philipp, Dr. 
 > wrote:

 

Dear all I was wondering if anybody has experience running a galaxy production 
server using docker for mac. I know it's beta testing at the moment but since 
the Virtual machine environment gave us such a hard time preserving and 
managing user data etc. I thought I try it anyway...





However, it seems to be not as easy as expected.

 

after installation of docker I pull the new docker galaxy image with

docker pull quay.io/bgruening/  galaxy:16.04





When I start a test container with net=host

docker run -it --net=host quay.io/bgruening/  
galaxy:16.04) 





I am not able to connect to the galaxy web app and get this  error:







Starting ProFTP

proftpd: ERROR (abnormal termination)









and 













==> /home/galaxy/logs/slurmd.log <==

[2016-06-29T08:13:41.440] error: Unable to resolve "moby": Unknown host

[2016-06-29T08:13:41.440] error: Unable to establish control machine address













I then tried to use Kinematik and at least I get the web app running. However, 
I didn't find the option to change the network settings to net=host













And I have the additional problem that I have to assign ownership rights to the 
folders in /export and I get the following error:









chown -R   postgres:postgres /postgresql

chown: postgres: illegal group name





I know these are many issues, but maybe one of you has experience with this and 
could provide some help.





Thanks a lot,





Philipp







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Re: [galaxy-dev] Docker for Mac

2016-06-29 Thread Philipp Rathert 
Hi Ido,

I get no error message, but the command does not change anything. Rights are 
still assigned to host user and not to postgresql.

Could it be that, since galaxy and other program were running in a docker 
container, none of these users are known in the actual host environment?


Cheers,

Philipp

-Original Message-
From: Tamir,Ido [mailto:ido.ta...@vbcf.ac.at] 
Sent: Wednesday, June 29, 2016 12:50 PM
To: Rathert, Philipp, Dr. 
Cc: galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] Docker for Mac

>
> On 29 Jun 2016, at 10:23, Rathert, Philipp, Dr. 
>  wrote:
>
> And I have the additional problem that I have to assign ownership 
> rights to the folders in /export and I get the following error:
> 
>
> chown -R postgres:postgres /postgresql
> chown: postgres: illegal group name
>

I think on OSX the user/group is _postgres and it should be
> chown -R _postgres:_postgres /export


> On 29 Jun 2016, at 10:23, Rathert, Philipp, Dr. 
>  wrote:
>
> Dear all I was wondering if anybody has experience running a galaxy 
> production server using docker for mac. I know it's beta testing at 
> the moment but since the Virtual machine environment gave us such a 
> hard time preserving and managing user data etc. I thought I try it anyway...
>
> However, it seems to be not as easy as expected.
>
> after installation of docker I pull the new docker galaxy image with 
> docker pull quay.io/bgruening/galaxy:16.04  When I start a test 
> container with net=host docker run -it --net=host 
> quay.io/bgruening/galaxy:16.04)  I am not able to connect to the 
> galaxy web app and get this  error:
>
> 
> Starting ProFTP
> proftpd: ERROR (abnormal termination)
>
> 
> and
>
>
>
> ==> /home/galaxy/logs/slurmd.log <==
> [2016-06-29T08:13:41.440] error: Unable to resolve "moby": Unknown 
> host [2016-06-29T08:13:41.440] error: Unable to establish control 
> machine address
>
>
>
> I then tried to use Kinematik and at least I get the web app running. 
> However, I didn't find the option to change the network settings to 
> net=host
>
>
>
> And I have the additional problem that I have to assign ownership 
> rights to the folders in /export and I get the following error:
> 
>
> chown -R postgres:postgres /postgresql
> chown: postgres: illegal group name
>
> I know these are many issues, but maybe one of you has experience with 
> this and could provide some help.
>
> Thanks a lot,
>
> Philipp
>
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this and other 
> Galaxy lists, please use the interface at:
>  https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>  http://galaxyproject.org/search/mailinglists/


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Re: [galaxy-dev] History is not up-to-date

2016-06-15 Thread Philipp Rathert 
HI Carl,

 

I am travelling these days but will check on Monday. 

 

Thanks in advance.

 

Cheers,

 

Philipp 

 

From: Carl Eberhard [mailto:carlfeberh...@gmail.com] 
Sent: Tuesday, June 14, 2016 6:24 PM
To: Rathert, Philipp, Dr. 
Cc: galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] History is not up-to-date

 

Hi, Phillip

 

Quick questions:

- is the time properly set on the computer where you've got Galaxy running in 
the browser?

- is the time in the docker container also correct?

 

>From you terminal output it looks like the update time might be the issue and 
>we can then take it from there. Thanks

 

 

On Tue, Jun 14, 2016 at 11:28 AM, Rathert, Philipp, Dr. 
 > wrote:

Dear All,

 

 

I have a problem with my histories. 

We are running the Docker galaxy stable version 16.04 and when I start a tool 
the history does not show that it is running. it is not specific for any tool 
but for all.

 

 

 

 



 

 

however, something is running in the back

 

129.69.102.30 - - [14/Jun/2016:12:57:21 +] "GET 
/api/histories/5114a2a207b7caff/contents?v=dev=update_time-ge=2016-06-14T12%3A49%3A16.601Z
 HTTP/1.1" 200 - "http://129.69.102.42/; "Mozilla/5.0 (Macintosh; Intel Mac OS 
X 10_11_3) AppleWebKit/601.4.4 (KHTML, like Gecko) Version/9.0.3 Safari/601.4.4"

[pid: 271|app: 0|req: 74/163] 129.69.102.30 () {44 vars in 964 bytes} [Tue Jun 
14 12:57:21 2016] GET 
/api/histories/5114a2a207b7caff/contents?v=dev=update_time-ge=2016-06-14T12%3A49%3A16.601Z
 => generated 2511 bytes in 33 msecs (HTTP/1.1 200) 3 headers in 124 bytes (1 
switches on core 2)

129.69.102.30 - - [14/Jun/2016:12:57:25 +] "GET 
/api/histories/5114a2a207b7caff/contents?v=dev=update_time-ge=2016-06-14T12%3A49%3A20.635Z
 HTTP/1.1" 200 - "http://129.69.102.42/; "Mozilla/5.0 (Macintosh; Intel Mac OS 
X 10_11_3) AppleWebKit/601.4.4 (KHTML, like Gecko) Version/9.0.3 Safari/601.4.4"

[pid: 271|app: 0|req: 75/164] 129.69.102.30 () {44 vars in 964 bytes} [Tue Jun 
14 12:57:25 2016] GET 
/api/histories/5114a2a207b7caff/contents?v=dev=update_time-ge=2016-06-14T12%3A49%3A20.635Z
 => generated 2511 bytes in 29 msecs (HTTP/1.1 200) 3 headers in 124 bytes (1 
switches on core 1)

129.69.102.30 - - [14/Jun/2016:12:57:29 +] "GET 
/api/histories/5114a2a207b7caff/contents?v=dev=update_time-ge=2016-06-14T12%3A49%3A24.673Z
 HTTP/1.1" 200 - "http://129.69.102.42/; "Mozilla/5.0 (Macintosh; Intel Mac OS 
X 10_11_3) AppleWebKit/601.4.4 (KHTML, like Gecko) Version/9.0.3 Safari/601.4.4"

[pid: 271|app: 0|req: 76/165] 129.69.102.30 () {44 vars in 964 bytes} [Tue Jun 
14 12:57:29 2016] GET 
/api/histories/5114a2a207b7caff/contents?v=dev=update_time-ge=2016-06-14T12%3A49%3A24.673Z
 => generated 2112 bytes in 30 msecs (HTTP/1.1 200) 3 headers in 124 bytes (1 
switches on core 0)

129.69.102.30 - - [14/Jun/2016:12:57:33 +] "GET 
/api/histories/5114a2a207b7caff/contents?v=dev=update_time-ge=2016-06-14T12%3A49%3A28.711Z
 HTTP/1.1" 200 - "http://129.69.102.42/; "Mozilla/5.0 (Macintosh; Intel Mac OS 
X 10_11_3) AppleWebKit/601.4.4 (KHTML, like Gecko) Version/9.0.3 Safari/601.4.4"

[pid: 272|app: 0|req: 90/166] 129.69.102.30 () {44 vars in 964 bytes} [Tue Jun 
14 12:57:33 2016] GET 
/api/histories/5114a2a207b7caff/contents?v=dev=update_time-ge=2016-06-14T12%3A49%3A28.711Z
 => generated 2112 bytes in 32 msecs (HTTP/1.1 200) 3 headers in 124 bytes (1 
switches on core 0)

129.69.102.30 - - [14/Jun/2016:12:57:37 +] "GET 
/api/histories/5114a2a207b7caff/contents?v=dev=update_time-ge=2016-06-14T12%3A49%3A32.749Z
 HTTP/1.1" 200 - "http://129.69.102.42/; "Mozilla/5.0 (Macintosh; Intel Mac OS 
X 10_11_3) AppleWebKit/601.4.4 (KHTML, like Gecko) Version/9.0.3 Safari/601.4.4"

[pid: 271|app: 0|req: 77/167] 129.69.102.30 () {44 vars in 964 bytes} [Tue Jun 
14 12:57:37 2016] GET 
/api/histories/5114a2a207b7caff/contents?v=dev=update_time-ge=2016-06-14T12%3A49%3A32.749Z
 => generated 2112 bytes in 27 msecs (HTTP/1.1 200) 3 headers in 124 bytes (1 
switches on core 3)

 

 

 

I am not sure how to fix this and I am happy for any suggestion.

 

Cheers,

 

Philipp


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Re: [galaxy-dev] cleanup datasets error

2016-06-14 Thread Philipp Rathert 
HI Björn,

 

I have added these to the galaxy.ini via the docker specific e- variables 
during startup of the container.

 

How can I check if they are broken?

 

Cheers,

 

Philipp

 

From: Bjoern Gruening [mailto:bjoern.gruen...@gmail.com] 
Sent: Tuesday, June 14, 2016 9:30 AM
To: Rathert, Philipp, Dr. ; galaxy-dev 

Subject: Re: [galaxy-dev] cleanup datasets error

 

Hi Philipp,

have you followed this from the readme?




Note that if you would like to run any of the  

 cleanup scripts, you will need to add the following to 
/export/galaxy-central/config/galaxy.ini:

database_connection = postgresql://galaxy:galaxy@localhost:5432/galaxy
file_path = /export/galaxy-central/database/files

Or is this broken?
Cheers,
Bjoern



On 14.06.2016 09:21, Rathert, Philipp, Dr. wrote:

Dear all,







when I want to start the cleanup datasets script I get the following error.





(.venv)root@galaxy:/galaxy-central# python 
/galaxy-central/scripts/cleanup_datasets/cleanup_datasets.py config/galaxy.ini 
-d -10 -1

Traceback (most recent call last):

  File "/galaxy-central/scripts/cleanup_datasets/cleanup_datasets.py", line 
544, in 

main()

  File "/galaxy-central/scripts/cleanup_datasets/cleanup_datasets.py", line 99, 
in main

for key, value in config_parser.items( "app:main" ):

  File "/usr/lib/python2.7/ConfigParser.py", line 642, in items

raise NoSectionError(section)

ConfigParser.NoSectionError: No section: 'app:main'









We are using the docker galaxy stable 16.04 version. Before this script always 
worked without producing any error. 







It would be great if anybody has an idea how to fix this...





Thank you very much in advance.





Cheers,





Philipp 









-Original message-
From: Marius van den Beek   

Sent: Tuesday 7th June 2016 14:06
To: Marco Tangaro   
Cc: galaxy-dev   

Subject: Re: [galaxy-dev] Python tool wrapper with multiple input and output 
files




Hi Marco, 

 

you've got an interesting use-case there.

You may want to use either a dataset list (if you only supply rna_n.bam),

or a paired dataset list (rna_n.bam and dna_n.bam). 

I would probably implement a conditional, where the user selects either a 
dataset list or a paired dataset list.

The output would then be another collection of output files.

Have a look at the test tool folder, and see if any of the tools named 
collection_*.xml fits what you would like to do

https://github.com/galaxyproject/galaxy/tree/dev/test/functional/tools

These two may be a good basis for what you want to achieve:

https://github.com/galaxyproject/galaxy/blob/dev/test/functional/tools/collection_creates_list.xml

[this one creates an output collection]

https://github.com/galaxyproject/galaxy/blob/dev/test/functional/tools/collection_two_paired.xml

[this one has a conditional to either select a list or a paired list as input]

 

Let us know if you need more help!

 

Cheers,

Marius

 

On 7 June 2016 at 09:50, Marco Tangaro  > wrote:

Dear experts,
my name is Marco and I'm working to port our python tool to the Galaxy 
framework.
The main script needs a rna.bam file as input, a reference fasta file, both 
mandatory. Finally, you can add a dna.bam file, but this is optional.
Therefore an example command is:

script.py -i rna.bam -f reference.fa -j dna.bam

The outout is a tabular.
Again the -j dna.bam option is completely optional.
So quite soon it turned out that I had to use a python wrapper to parse our 
script. Now the wrapper works fine.


The next step is to run the tool over multiple input file and we would like to 
avoid to use a workflow.

The idea is that to each input file corresponds an output file. The reference 
is still the same.
For instance, we have:

rna_1.bam + dna_1.bam -> output_1.txt
rna_2.bam + dna_2.bam -> output_2.txt
rna_3.bam + dna_3.bam -> output_3.txt
...
and so on.


But I don't know the best strategy to give to my wrapper multiple input files.
Moreover I have to be sure, when the dna_xyz.bam files are uploaded, that they 
correspond to the right rna_xyz.bam file.

I would like to have as output a page which is showing as results the link to 
the single output files as suggested here.
https://wiki.galaxyproject.org/Admin/Tools/Multiple%20Output%20Files
planning to integrate a javascript interface.

I've browsed a lot, but on multiple input file the posts are old.
I'm using the last galaxy release (16_04).

I'm quite new to the galaxy world...
Thanks a lot for your suggestions,
Marco


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Please keep all replies on

Re: [galaxy-dev] perl version 5.18.1 repository error

2016-03-24 Thread Philipp Rathert 
HHi Marius,

 

Many thanks for this detailed information. I reinstalled the pearl package and 
it has now the 8.25 version as an additional dependency.

 

The tool seems to work as well.

 

Thanks again, I will ignore the 8.22 version.

 

 

Cheers,

 

Philipp

 

From: Marius van den Beek [mailto:m.vandenb...@gmail.com] 
Sent: Donnerstag, 24. März 2016 11:49
To: Rathert, Philipp, Dr. 
Cc: Nicola Soranzo ; galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] perl version 5.18.1 repository error

 

Hi Philipp,

 

I believe you have run into a rather complicated problem with perl's 
dependencies.

We (the IUC) have changed from coreutils-8.22 to coreutils-8.25 for exactly the 
reason you are reporting

(`...generated no output for the defined timeout period of 3600.0 seconds`).

So you should update your installation of package_perl_5_18_1.

 

Unfortunately, no stable release of galaxy up till now can handle this change 
of dependencies cleanly.

(16.04 will be the first release that should have no problem with this).

When you are doing an update of package_perl_5_18_1, you should have 
gnu-coreutils-8.25 listed as

one of perl's dependencies, as well as gnu-coreutils-8.22. For the moment the 
best thing you can do is to ignore

the status of gnu-coreutils-8.22. Once you upgrade galaxy to release_16.04 or 
newer, repairing package_perl_5_18_1

will remove gnu-coreutils-8.22 from the list of dependencies of perl.

This should not affect the functionality of perl or meme.

Let us know how it goes

 

Marius

 

On 24 March 2016 at 09:23, Rathert, Philipp, Dr. 
 > wrote:

Dear Nicola,

 

now it looks like package_gnu_coreutils_8_22

is generating an error

 

 


gnu_coreutils 

 

8.22

package

Error

Shutting down process id 23231 because it generated no output for the defined 
timeout period of 3600.0 seconds.



 

 

I didn't find anything an this error on the web and I am not sure how I can fix 
this...

 

cheers,

 

philipp 

-Original message-
From: Nicola Soranzo  >
Sent: Wednesday 23rd March 2016 12:49
To: Rathert, Philipp, Dr.  >; 
galaxy-dev@lists.galaxyproject.org  
Subject: Re: [galaxy-dev] perl version 5.18.1 repository error

Hi Philipp,
can you try to reinstall the tool dependency? Go to the Admin interface, 
"Manage installed tools", click on the "package_perl_xml_parser_expat_2_41", 
then from the "Repository Actions" menu select "Manage tool dependencies", 
select the dependency in error and "Uninstall", then select it again and 
"Install" it.

Cheers,
Nicola

On 23/03/16 08:06, Rathert, Philipp, Dr. wrote:

Dear all,

 

i am trying to install  tool (meme-fimo) which needs 
package_perl_xml_parser_expat_2_41 that has a pearl 5.18.1 dependency.

 

however, although the tool installs just fine it shows that 
package_perl_xml_parser_expat_2_41 has missing dependencies:

 

Tool shed repository:package_perl_xml_parser_expat_2_41 

Tool shed repository changeset revision:1ce3818a8eb9 

Tool dependency status:Error 

Tool dependency installation error:Error installing tool dependency perl 
version 5.18.1: Unable to locate the repository directory for revision 
d905bb415eca of installed repository package_perl_5_18 owned by iuc. 

Tool dependency installation 
directory:././tool_deps/perl/5.18.1/iuc/package_perl_xml_parser_expat_2_41/1ce3818a8eb9

 

Is this an error of my local instance or is the revision missing on the 
toolshed?

 

Thank you very much for your help.

 

Cheers,

 

philipp 

 

 

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Re: [galaxy-dev] perl version 5.18.1 repository error

2016-03-23 Thread Philipp Rathert 
Hi Nicola,

 

Now I get this:


 

 perl

5.18.1

package

Error

  File "lib/tool_shed/galaxy_install/install_manager.py", line 123, in 
install_and_build_package_via_fabric
tool_dependency = self.install_and_build_package( install_environment, 
tool_dependency, actions_dict )
  File "lib/tool_shed/galaxy_install/install_manager.py", line 108, in 
install_and_build_package
initial_download=False )
  File 
"lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py", line 
31, in execute_step
initial_download=initial_download )
  File "lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", 
line 1881, in execute_step
job_name=package_name )
  File 
"lib/tool_shed/galaxy_install/tool_dependencies/recipe/install_environment.py", 
line 118, in handle_command
self.log_results( cmd, output, os.path.join( self.install_dir, 
basic_util.INSTALLATION_LOG ) )
  File 
"lib/tool_shed/galaxy_install/tool_dependencies/recipe/install_environment.py", 
line 250, in log_results
logfile = open( file_path, 'wb' )

[Errno 2] No such file or directory: 
u'/galaxy-central/tool_deps/perl/5.18.1/iuc/package_perl_5_18/d905bb415eca/INSTALLATION.log'

 

 

 

From: Nicola Soranzo [mailto:nicola.sora...@gmail.com] On Behalf Of Nicola 
Soranzo
Sent: Mittwoch, 23. März 2016 12:49
To: Rathert, Philipp, Dr. ; 
galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] perl version 5.18.1 repository error

 

Hi Philipp,
can you try to reinstall the tool dependency? Go to the Admin interface, 
"Manage installed tools", click on the "package_perl_xml_parser_expat_2_41", 
then from the "Repository Actions" menu select "Manage tool dependencies", 
select the dependency in error and "Uninstall", then select it again and 
"Install" it.

Cheers,
Nicola

On 23/03/16 08:06, Rathert, Philipp, Dr. wrote:

Dear all,





i am trying to install  tool (meme-fimo) which needs 
package_perl_xml_parser_expat_2_41 that has a pearl 5.18.1 dependency.





however, although the tool installs just fine it shows that 
package_perl_xml_parser_expat_2_41 has missing dependencies:





Tool shed repository:package_perl_xml_parser_expat_2_41 

 

Tool shed repository changeset revision:1ce3818a8eb9 

 

Tool dependency status:Error 

 

Tool dependency installation error:Error installing tool dependency perl 
version 5.18.1: Unable to locate the repository directory for revision 
d905bb415eca of installed repository package_perl_5_18 owned by iuc. 

 

Tool dependency installation 
directory:././tool_deps/perl/5.18.1/iuc/package_perl_xml_parser_expat_2_41/1ce3818a8eb9

 

Is this an error of my local instance or is the revision missing on the 
toolshed?

 

Thank you very much for your help.

 

Cheers,

 

philipp 










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[galaxy-dev] cleanup

2016-02-19 Thread Philipp Rathert 
Dear All,

 

Since the new galaxy version, I am unable to perform a cleanup anymore.

 

>From the galaxy root directory I want to start the script
cleanup_datasets.py with the following line:

$ python cleanup_datasets.py /export/galaxy-central/config/galaxy.ini -d -60
-1

 

I get the error message:

Can't open file 'cleanup_datasets.py': no such file or directory. 

 

But when I go into the folder in which the script is located it doesn't work
as well.

 

 

For your information: we are running the latest docker-galaxy-stable
version.

 

I hope somebody has an idea.

 

Cheers,

 

Philipp

 

--

Philipp Rathert, PhD

Institute of Biochemistry

University Stuttgart

Pfaffenwaldring 55

D-70569 Stuttgart

Germany

Tel: +49 711 685 64388

Fax: +49 711 685 64392

 <mailto:philipp.rath...@ibc.uni-stuttgart.de>
philipp.rath...@ibc.uni-stuttgart.de

 <http://www.ibc.uni-stuttgart.de/> http://www.ibc.uni-stuttgart.de/

 <http://www.ibc.uni-stuttgart.de/mitarbeiter/Rathert/?__locale=en>
http://www.ibc.uni-stuttgart.de/mitarbeiter/Rathert/?__locale=en

 

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[galaxy-dev] NGS.plot script freeze

2016-02-09 Thread Philipp Rathert 
Dear All,

we are trying to use NGS-plot on our local docker-galaxy-stable instance.

The script freezes whenever we click on the tool.

Does anybody have an idea what is wrong and how to fix this?
There is no error message or anything.
Thank you very much.

Kind regards,

Philipp

 

 

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