Re: [galaxy-dev] Send data to GBrowse

2011-02-10 Thread Nicki Gray
Hi Liisa When setting this up on our own local instance to get bigwig files to display in Gbrowse we edited: 1. universe_wsgi.ini 2. tool-data/shared/gbrowse/gbrowse_build_sites.txt 3. datatypes_conf.xml so that it includes display file=gbrowse/gbrowse_wig.xml / 4. and in

[galaxy-dev] Hiding a tool via tool_conf.xml

2011-02-10 Thread Peter Cock
Hi all, I'm aware that in an individual tool's XML wrapper you can add hidden=true to the tool element to hide the tool from the listing shown in Galaxy's left hand panel (but the tool is still loaded and can be called by old workflows etc). Can this be done via the tool_conf.xml file as well?

Re: [galaxy-dev] Inquiring

2011-02-10 Thread Yan Luo
Dear Nate, It is great suggestion. I copy my root folder of galaxy as follows, could you please let me know if I need to change them to one user kangtu/admin. I hope we new user register can work today after I restart. - kangtu@dscbc-compute:~/Downloads/galaxy-dist$ ls -la total 1688

Re: [galaxy-dev] Inquiring

2011-02-10 Thread Nate Coraor
Yan Luo wrote: Dear Nate, Please find the following errors, it is the newest, and our restart is stopped. I hope we can get the solution from you as soon as possible. Hi Yan, Your last 4 messages included 3 different paths to Galaxy. It seems as though there are quite a few copies of