Re: [galaxy-dev] (i18n) How to make Galaxy display in Japanese?

2011-10-10 Thread Daniel Blankenberg
Hi HF, Limited support is available. In order to view Galaxy in other languages, you need to set the language preference in your browser to e.g. Japanese. Chrom, for example, allows you to set up a priority ordered list of prefered languages, so you'll have to set Japanese to the top of the li

Re: [galaxy-dev] (i18n) How to make Galaxy display in Japanese?

2011-10-10 Thread Greg Von Kuster
To clarify a bit more, there are currently only 2 languages supported in the Galaxy distribution; English and Japanese (note the 'en' and 'ja' subdirectories in the 'locale' directory).  Setting your preferred language in your browser to Japanese will only render some Galaxy content in Japanese.  T

Re: [galaxy-dev] Tool shed and datatypes

2011-10-10 Thread Duddy, John
I agree with the risks you cited. There is a risk in the other direction that I think is even scarier - without the ability to add data types, tool authors may be forced to use a "typeless" system, declaring all inputs/outputs as "data" or "text". While this works, it has the same drawbacks as

Re: [galaxy-dev] (i18n) How to make Galaxy display in Japanese?

2011-10-10 Thread Peter Cock
On Mon, Oct 10, 2011 at 2:39 PM, Greg Von Kuster wrote: > > To clarify a bit more, there are currently only 2 languages > supported in the Galaxy distribution; English and Japanese ... Is it possible for tool wrappers to embed alternative language text? Peter

Re: [galaxy-dev] Tool shed and datatypes

2011-10-10 Thread Peter Cock
On Mon, Oct 10, 2011 at 5:09 PM, Duddy, John wrote: > I agree with the risks you cited. > > There is a risk in the other direction that I think is even scarier - > without the ability to add data types, tool authors may be forced > to use a "typeless" system, declaring all inputs/outputs as "data"

Re: [galaxy-dev] Tool shed and datatypes

2011-10-10 Thread Jim Johnson
There are a number of well defined formats that are exchanged between applications, e.g. BAM, gtf, etc, I wouldn't advocate proliferating those. I see the need for Toolshed datatypes more for the intermediate file formats used within a suite of commands. These can be helpful in guiding a us

Re: [galaxy-dev] (i18n) How to make Galaxy display in Japanese?

2011-10-10 Thread Greg Von Kuster
I don't think our locale support works with Cheetah, but it's been quite some time since I've worked in this area, so I may be wrong. Most of the magic happens in the GalaxyWebTransaction.setup_i18n() method in ~/lib/galaxy/web/framework.__init__.py which is mako centric. It shouldn't be too

Re: [galaxy-dev] [galaxy-user] Problem with new tool shed

2011-10-10 Thread Greg Von Kuster
Hello Florent, On Oct 4, 2011, at 11:42 PM, Florent Angly wrote: > Hi Greg, > > Thank you for your help. Your suggestion worked like a charm! > > I was expecting to see an error because I did not create the ../shed_tool/ > folder that contains the tools installed from the shed, but I was happy

Re: [galaxy-dev] Tool shed and datatypes

2011-10-10 Thread Greg Von Kuster
Peter has the right idea here - we will add support for appropriate data types to the Galaxy distribution. Of course, the key word here is "appropriate", but any industry-standard data format should fall under this category. On Oct 10, 2011, at 12:46 PM, Peter Cock wrote: > On Mon, Oct 10, 201

Re: [galaxy-dev] Tool shed and datatypes

2011-10-10 Thread Greg Von Kuster
Hello Jim, On Oct 10, 2011, at 1:01 PM, Jim Johnson wrote: > There are a number of well defined formats that are exchanged between > applications, e.g. BAM, gtf, etc, I wouldn't advocate proliferating those. > > I see the need for Toolshed datatypes more for the intermediate file formats > u

[galaxy-dev] cloudman on private cloud

2011-10-10 Thread Rodrigo García Herrera
Hello! If I setup a private cloud infrastructure with ubuntu, can I setup galaxy cloudman there? Thanks! Rodrigo ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and ot

Re: [galaxy-dev] trinity on galaxy

2011-10-10 Thread Jeremy Goecks
David, I'm cc'ing the galaxy-dev mailing list; let's keep this thread on the list for archival and community purposes. > >> I had a look through the Trinity.pl script and found that the default >> butterfly >> heap is set to 1G. >> >> I've changed this to 2G. Would you re-run the trinity job

Re: [galaxy-dev] (i18n) How to make Galaxy display in Japanese?

2011-10-10 Thread Hanfei Sun
It works when I set Japanese as the preferred language. I saw these lines in ginga.po under the folder galaxy-dist/locale/jp/LC_MESSAGES #: tools/**.xml #: tool_conf.xml msgid "Get Data" msgstr "データ取得" msgid "Get ENCODE Data" msgstr "ENCODEデータ取得" msgid "ENCODE Tools" msgstr "ENCODEツール" But