Hi Liram
I was suggesting: instead of copying the existing Galaxy directory into
another location. Download and install a new Galaxy installation in a
separate location on your file system.
for the installation procedure, see:
http://wiki.g2.bx.psu.edu/Admin/Get%20Galaxy
all you need to do
Hi,
I've created a java app tested it from the command line and put it in the
shared/jars folder. It runs for a while and then the history item turns
red. If I view the dataset output though, everything is as should be, i.e.
the expected output from the tool is seen.
If I click on the view error 'b
HI Nate,
Many thanks for these ideas - our HPC guys are going to try a few things.
Hopefully we'll nail the problem and be able to report back in case someone
else has the same issues.
Best Wishes,
David.
__
Dr David A. Matthews
Senior Lecturer in Virology
Roo
Hi Hans,
Thank you for your quick reply.
Sorry, But I'm a "rookie" Galaxy user,
So may you pls explain me in details the meaning by " running a second Galaxy
server in parallel using a fresh check-out "?
Thank a lot for your assistance!
Liram
-Original Message-
From: Hans-Rudolf Hotz
Seems like an error concerning permissions in your galaxy folders. Try:
sudo chmod 777 galaxy-dist/
and then try to upload data again.
To: galaxy-...@bx.psu.edu
From: liisa.ko...@dnalandmarks.ca
Date: Tue, 20 Dec 2011 16:22:02 -0500
Subject: [galaxy-dev] Problem uploading files from filesystem
Dear Galaxy Developers,
We work in Professor Dawn Field's group (Molecular Evolution and Bioinformatics
Research Group) at the NERC Environmental Bioinformatics Centre (NEBC) of the
Centre for Ecology and Hydrology (CEH) Research Institute based in Oxford.
We develop and distribute Bio-Linux (h
My apologies for the noise - I'm just trying to figure out who to talk to here:
A colleague and I are developing a dataset that we believe will be of
significant interest to the psychiatric genetics field. We believe that one of
the biggest obstacles currently facing the field is the lack of a
I have installed a new Galaxy server utilizing the November 18,2011
distribution on a SLES 11 VM and cannot get it to launch cleanly. I am running
postgreSQL v. 8.3.9 to create my database. Once the database is created and
running I launch my Galaxy server and within moments all of the PID fai
