Hello,
We don't use the nginx module
kind regards,
Leandro
On Wed, Mar 7, 2012 at 4:42 PM, Jorrit Boekel
wrote:
> Hi Nate,
>
> I wasn't before, but I switched to nginx now. Non-uploading is still
> happening in firefox (10.0.2 on ubuntu 11.10).
>
> I can't be 100% sure that my nginx install was
Dear all,
I would like to clarify whether we have understood something about the
database correctly. Is is right that all calculations with galaxy are
stored as a link in the database. And the data are stored somewhereelse?
Is it possible to store the data only in the database?
For some advic
Hi Huayan
> I got a silly question for you. My galaxy is running now but I'd like
> to customize it.
> I've changed the welcome.html page but the galaxy mirror site is
> showing the old one. Do I need to change some other files or other
> configurations?
Are you sure the page is not cached local
Hi Pablo,
About 3 weeks ago Praveen mentioned a bug in SNPEff such that it no longer
correctly displays the HTML report in galaxy – we have the exact same error. Is
there a workaround for this yet? I found his original report here:
http://article.gmane.org/gmane.science.biology.galaxy.user/2418
Hi Christin,
> I would like to clarify whether we have understood something about the
> database correctly. Is is right that all calculations with galaxy are
> stored as a link in the database. And the data are stored somewhereelse?
Yes, kind of :)
> Is it possible to store the data only in t
This was addressed in 6788:e58a87c91bc4. The reason for the initial change
that's causing these display issues was to eliminate potential XSS
vulnerabilities. There's now a configuration option (sanitize_all_html, which
is True by default) for local instances where you can disable the extra ht
Hi friends,
I've got a problem, i'm not able to add a tool in ttol_conf.xml. Actually i can
see one tool that i've added but when i put the second Galaxy doesn't take it
into account :
My paster.log gives that :
galaxy.tools ERROR 2012-03-08 16:07:57,849 error reading tool fro
Very helpful, thank you!
I don't see this option in universe_wsgi.ini, but hopefully I will when we
update our galaxy.
Thanks!
-John
On 3/8/12 9:53 AM, "Dannon Baker" wrote:
>This was addressed in 6788:e58a87c91bc4. The reason for the initial
>change that's causing these display issues wa
On Thu, Mar 8, 2012 at 3:54 PM, Sivasangari NANDY wrote:
> Hi friends,
>
> I've got a problem, i'm not able to add a tool in ttol_conf.xml. Actually i
> can see one tool that i've added but when i put the second Galaxy doesn't
> take it into account :
>
>
>
>
>
>
> My paster.log
Hi Sivasangari ,
your tools has an error. Tools with an error don't get listed. Can you
show us the rec_expression.xml file?
I guess you need to change the 'string' to 'text' or something like
that.
Cheers,
Bjoern
>
> I've got a problem, i'm not able to add a tool in ttol_conf.xml.
> Actually i
from a choosen one rec_expression.pl $input $output
Yea i think i must replace this line : and change the
type to text maybe, i'll test it in few mins (some problems for the moment) and
give you the answer.
n.b : no Peter, i've just forgot to put the list email.
The same for us. We never changed anything on our local dev or prod server. The
dev server which runs the latest central edition is still suffering from it.
Earlier there was no problem at all.
Why is it the ngnix issue?
Alex
-Oorspronkelijk bericht-
Van: galaxy-dev-boun...@lists.bx.psu.
Early 2011 there was a discussion and feature request to be able to refresh loc
files on a running galaxy instance.
This is not only convenient for updating loc files for blast, bowtie, bwa and
such, but also opens possibilities to update and dynamically populate such
files to be used in other c
Thanks to bjoern and Peter, it's working now.I've juste change the type string
to text.
regards, Siva
> Subject: Re: [galaxy-dev] unable to add tools in tool_conf.xml
> From: bjoern.gruen...@pharmazie.uni-freiburg.de
> To: nsi...@hotmail.com
> CC: galaxy-dev@lists.bx.psu.edu
> Date: Thu, 8 M
Hello,
I am new to galaxy and bioinformatics in general. I have installed galaxy (and
supporting software) on my mac pro with 8 cores and 24 Gb of memory. The main
issue is that it runs really slow. When I look at CPU and memory allocation to
python, less than 10% of each are being used. Is
Jan;
No problem, sorry I don't have a nicer immediate solution for
you. I appreciate the problem report and hopefully we'll figure out a
clean fix for this.
CloudBioLinux does have Velvet included by default, so you should be
able to use it without needing to compile. Were you having trouble
buil
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