On Mon, May 14, 2012 at 10:22 PM, Jean-Christophe Ducom
wrote:
> All-
> Is there a way to change the upload default directory structure
> (/database/files) to organize files per user_id instead?
> something along the following lines
> ~galaxy-dist/database/files/postgresql_user_id0
> ~galaxy-dist/
Hi,
I would like to understand which parameters, ideally which algorithm go
into the scores one obtains from the quality statistics out of fastQ
illumina data.
What is this score composed of? And how come that applying fastq groomer
and then using fastq summary statistics tool gives a different
On Mon, May 14, 2012 at 9:03 PM, Claudia Gottstein
wrote:
> Hi,
> I would like to understand which parameters, ideally which algorithm go into
> the scores one obtains from the quality statistics out of fastQ illumina
> data.
> What is this score composed of? And how come that applying fastq groom
Thank you for your email Peter.
We have implemented Galaxy to interface with our HPC cluster via PBS/Torque.
Thanks to DRMAA (not PBS python) all user cpu usage can be accounted.The
motivation is indeed what you describe besides managing cost/disk performance
on user/project basis as we have a t
On May 15, 2012, at 10:15 AM, Jean-Christophe Ducom wrote:
> Thank you for your email Peter.
> We have implemented Galaxy to interface with our HPC cluster via PBS/Torque.
> Thanks to DRMAA (not PBS python) all user cpu usage can be accounted.The
> motivation is indeed what you describe besides
Nate-
I do know about the disk accounting/quota features of Galaxy
As I eluded in my previous email, it goes beyond accounting actually. I
wanted to be able to implement something like:
~/galaxy-dist/database/files/user_id_000 -> /one_data_pool_set/id_000
~/galaxy-dist/database/files/user_id_001
On Mar 14, 2012, at 9:16 PM, Huayan Gao wrote:
> Yes, I did read the page and followed the instructions. But somehow, I keep
> getting the error message, "Forbidden……You don't have permission to access
> /galaxy/static/welcome.html…."
> I did add +x to all files under folder /static.
> -rwxrwx
Hi all,
I have a strange problem when I am trying to run workflow using Galaxy API.
If the workflow contains Tophat for Illumina, then when I am trying to use the
"submit" API script in order to execute this workflow on some input dataset,
I am strangely getting this HTTP error:
"Error. 500 Inte
Hello All,
We have a large amount of data on our production server that we would like
to make available on our new test server. I tried to move data from our
production server to our test server by copying the meta-data files and
dataset files from ~/database/files to the new test server but it di
Hello,
Please forgive the length of this proposition as I try to explain my
reasoning behind this. Let me say first of all that I understand that
Galaxy is not meant to be everything to everyone and that requests for
features may not suit everyone who uses Galaxy. That being said I have an
idea or
Hi all,
I have just created scripts that ran velveth, velvetg and oases. The
outputs of these commands are kept in a separate folder. Is it possible to
show the data stored in this folder in our Galaxy web page? Or I don't have
a choice but to upload them?
Cheers,
CL
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