Re: [galaxy-dev] Environment variables

2013-04-26 Thread Matthias Zytnicki
Dear Björn, Is not it what I did? I wrote "numpy" in "test.xml", and the version number is the same as yours... Many thanks again, Matthias. On Thu, 25 Apr 2013, Björn Grüning wrote: Hi Matthias, you need to add something like the following to your tool defintion:    chemfp The versi

[galaxy-dev] Running Galaxy through Apache

2013-04-26 Thread Jeffrey Long
Hi folks, I am wanting to run a galaxy instance and serve it at a location other than the webserver root, i.e. at http://mymachine.com/galaxy rather than just at http://mymachine. To do this, I've followed the instructions about proxying Galaxy through Apache at http://wiki.galaxyproject.org/Admi

[galaxy-dev] Creating multiple datasets in a libset

2013-04-26 Thread Rob Leclerc
I'm looking at example_watch_folder.py and it's not clear from the example how you submit multiple datasets to a library. In the example, the first submit returns a libset [] with only a single entry and then proceeds to iterate through each dataset in the libset in the following section: data = {

Re: [galaxy-dev] Running Galaxy through Apache

2013-04-26 Thread Adam Brenner
Jeff, How / Where did you add the apache changes? Are you using VirutalHosts or ... ? Quick glance, everything appears correct. Its been a while since I used Apache (switched everything to nginx) however I believe if you want to setup a Reverse Proxy, you need to add / use the proxy pass lines whi