On Fri, Aug 22, 2014 at 9:39 AM, Marija Atanaskovic
wrote:
>
> Mira doesn’t work on Galaxy. This is the log message I receive.
>
> Tool: Assemble with MIRA v3.4
> Name: MIRA log
> Created: Fri Aug 22 00:24:38 2014 (UTC)
> Filesize: 0 bytes
> Dbkey: ?
> Format: txt
> Galaxy Tool Version: 0.0.10
> T
Yes sorry about this - Eric reported this same problem this week.
bioblend is not using API endpoints to download datasets and this is a
problem for proxies with REMOTE_USER configured since most such
proxies are only configured to allow through requests on /api and this
is definitely not the route
Hi John,
We resolved the toolshed download issue by adding an entry for https_proxy
in our /etc/environment file.
Thanks for all your help.
Audrey
On Wed, Aug 20, 2014 at 5:55 PM, audrey michel
wrote:
> Hi John,
>
> We also tried adding the proxy server ip address as follows to some hgrc
> fi
On Aug 20, 2014, at 3:53 AM, Matthias Enders
wrote:
> Hi,
>
> I have a question regarding the user authentication of Galaxy.
>
> As to my knowledge galaxy uses http, also for the authentication, so the User
> Email and the password are send in clear text.
>
> As I like to use Galaxy for u
On Aug 21, 2014, at 3:48 PM, Michael Ta wrote:
> Hi,
>
> I updated a local Galaxy installation a while back and I followed the steps
> listed on one of the wiki pages. The update included changes to the database
> schema and I was careful to backup and restore it according to the
> directions
Hi Nate,
I'm thinking I misread the documentation on the restore part. What happened
was I pulled and updated that galaxy-dist repository and then when I got it
running after migrating the tools and updating the database schema to the
new version, it either didn't display my previous histories or
On Fri, Aug 22, 2014 at 8:18 PM, Marija Atanaskovic
wrote:
> Hi Peter,
>
> I don¹t know what the stdout and stderr information was. I click on it but
> nothing comes up.
>
> I installed from the main toolshed:
> http://toolshed.g2.bx.psu.edu/view/peterjc/mira_assembler
> Yes, I did use the test to
On Fri, Aug 22, 2014 at 8:00 PM, Peter Cock wrote:
> On Fri, Aug 22, 2014 at 9:39 AM, Marija Atanaskovic
> wrote:
>
>> Also I can’t install Mira 4. This is the message I receive.
>> Any suggestions.
>
> Getting "Internal Server Error" is unhelpful - I can't
> really guess what might be going wron
We are about to implement a fasta database (file) versioning system as a Galaxy
tool. I wanted to get interested people's feedback first before we roll ahead
with the prototype implementation. The versioning system aims to:
* Enable reproducible research: To recreate a search result at a certa
Hi Peter,
Thanks for your response and for the advice from the other subscribers. I
am not the site administrator, but I have passed on all the email
correspondence to the administrators. I am a “wet-lab” scientist who
wanted to use the programme for my work. That is why I use Galaxy as the
script
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