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Hi,
I have implemented a custom tool which will parse a given string in to
expected format. Installed this custom tool into galaxy and was able to run
successfully.
I would like to add test cases to this tool, can you please provide me
resources to write test cases for this custom tool.
Is this
2:53 PM, Janaki Rama Rao Gollapudi <
janakiram.gollap...@india.semanticbits.com> wrote:
> Hi,
>
> I have implemented a custom tool which will parse a given string in to
> expected format. Installed this custom tool into galaxy and was able to run
> successfully.
>
> I wou
;https://wiki.galaxyproject.org/Admin/Tools/Writing%20Tests>
>
>
> Thanks,
> JanakiRam
>
>
> On Thu, Mar 27, 2014 at 2:53 PM, Janaki Rama Rao Gollapudi <
> janakiram.gollap...@india.semanticbits.com> wrote:
>
>> Hi,
>>
>> I have implemented a cust
:16 PM, Greg Von Kuster wrote:
> As Janaki replied below, see:
> http://wiki.galaxyproject.org/Admin/RunningTests?action=show&redirect=Admin%2FRunning+Tests
>
> On Mar 27, 2014, at 7:15 AM, Janaki Rama Rao Gollapudi <
> janakiram.gollap...@india.semanticbits.com> wrote:
>
es; sh
> run_functional_tests.sh -installed
>
>
> Greg Von Kuster
>
> On Mar 27, 2014, at 8:58 AM, Janaki Rama Rao Gollapudi <
> janakiram.gollap...@india.semanticbits.com> wrote:
>
> Hi,
>
> Thanks for reply. I composed a details email for better clarity.
Hi,
I have modified the tool dependency xml file by adding Absolute path to
output file, like below, then my test cases are *passing*:
Thanks for all your help.
Thanks,
JanakiRam
On Fri, Mar 28, 2014 at 2:39 PM, Janaki Rama Rao Gollapudi <
janakiram.gol
Hi,
I have implemented a custom tool called 'barcode-parse' and uploaded this
custom to into my local tool shed(which is running at http://localhost:9009).
Also able to install this custom tool from galaxy.
Then I have added simple repository dependency. I have created a xml file
'repository_depe
Hi,
Did anyone faced this issue ?. I struck here. Please suggest me.
Thanks,
JanakiRam
On Wed, Apr 2, 2014 at 3:10 PM, Janaki Rama Rao Gollapudi <
janakiram.gollap...@india.semanticbits.com> wrote:
> Hi,
>
> I have implemented a custom tool called 'barcode-parse' a
; Am 03.04.2014 09:05, schrieb Janaki Rama Rao Gollapudi:
>
>> Hi,
>>
>> Did anyone faced this issue ?. I struck here. Please suggest me.
>>
>>
>> Thanks,
>> JanakiRam
>>
>>
>> On Wed, Apr 2, 2014 at 3:10 PM, Janaki Rama Rao Gollapu
Hi Bjoern,
I also exported both the repositories from local toolshed. Please find the
attached files.
Thanks,
JanakiRam
On Thu, Apr 3, 2014 at 12:50 PM, Janaki Rama Rao Gollapudi <
janakiram.gollap...@india.semanticbits.com> wrote:
> Hi,
>
> Thanks for quick reply. Please fi
ository dependencies, so
for testing I am trying to add simple repository dependency to my custom
tool.
>
> Cheers,
> Bjoern
>
> Am 03.04.2014 09:30, schrieb Janaki Rama Rao Gollapudi:
>
> Hi Bjoern,
>>
>> I also exported both the repositories from local tools
s expected?
>
>
>
> Am 03.04.2014 12:01, schrieb Janaki Rama Rao Gollapudi:
>
> Hi Bjoern,
>>
>> Please see my comments inline.
>>
>> On Thu, Apr 3, 2014 at 3:14 PM, Björn Grüning
>> wrote:
>>
>> Hi Janaki,
>>>
If he tries to
> install it, Galaxy complains about a wrong syntax inside the
> repository_dependecies.xml file. Imho "prior_installation_required" does
> not make sense in repository_dependencies.xml or? Is that an bug?
>
> JanakiRam can you confirm my summary?
>
> Thank
o "prior_installation_required" does
> not make sense in repository_dependencies.xml or? Is that an bug?
> >>
> >> JanakiRam can you confirm my summary?
> >>
> >> Thanks,
> >> Bjoern
> >>
> >> Am 03.04.2014 12:49, sc
; attribute incorrectly added (and set to "False") to the tag
>> when a repository was exported.
>>
>> Greg Von Kuster
>>
>> On Apr 3, 2014, at 9:53 AM, Janaki Rama Rao Gollapudi <
>> janakiram.gollap...@india.semanticbits.com> wrote:
>>
>>
Hi,
For testing I have installed custom tool A and its repository dependency
custom tool B. Actually as per the implementation there is no dependency
among these two custom tools. But in general if we want to access a tool
inside another tool implementation how should I do that.
Can you please sh
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