[galaxy-dev] Problem about configuring Proftpd with Mysql and galaxy

2012-05-04 Thread Misharl mon
Hi everyone, I have a problem about configuring Proftpd and Mysql with galaxy, i have followed the steps from the galaxy wiki about ftp. I have created a database 'galaxy' and a user mmonsoor which has all the rights on the database. I think that the reason is about the proftpd.conf, below is

[galaxy-dev] FTP Problem: Users cannot see their uploads files.

2012-05-09 Thread Misharl mon
Hi everybody, I have managed to get proftpd to work, it can connect to the galaxy sql database, and users can log to upload files in their directory. But there is a problem, when a galaxy user logs in the galaxy web platform, the user can't see his upload files since Galaxy doesn't have the

[galaxy-dev] Configuring Proftpd for galaxy.

2012-06-15 Thread Misharl mon
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Re: [galaxy-dev] Configuring Proftpd for galaxy.

2012-06-18 Thread Misharl mon
situation. in our case it is 1009 and 100 for example. Look it up using : $ id **the username running galaxy** best regards Geert Vandeweyer On 06/15/2012 03:35 PM, Misharl mon wrote

Re: [galaxy-dev] Configuring Proftpd for galaxy.

2012-06-19 Thread Misharl mon
to the path were ftp-uploads will be stored. This is specified in universe_wsgi.ini as ftp_upload_dir = /path/to/galaxy-ftp Best regards, Geert On 06/18/2012 09:45 AM, Misharl mon wrote: Hi, Thank you very much

[galaxy-dev] Select all option in FTP Uploading

2012-07-19 Thread Misharl mon
Hi all, I was wondering how to upload several files at a time, without clicking on every checkbox to upload file with FTP. Like creating an select all option, is it possible? Best regards Mish

[galaxy-dev] Problem with tabular files

2013-07-29 Thread Misharl mon
Hi everybody, In my lab, after upgrading our Galaxy instance to the latest version, we have a problem with displaying tabular files. Any idea from where the problem can come? Thanks in advance to all. Mish

[galaxy-dev] Problem with tabular files

2013-07-29 Thread Misharl mon
: [galaxy-dev] Problem with tabular files From: dannon.ba...@gmail.com To: mish...@hotmail.com CC: galaxy-dev@lists.bx.psu.edu What is the problem you're observing, and do you see any errors in the galaxy log or javascript console? -Dannon On Mon, Jul 29, 2013 at 5:51 AM, Misharl mon mish

Re: [galaxy-dev] Problem with tabular files

2013-07-29 Thread Misharl mon
@lists.bx.psu.edu What happens when you attempt view the tabular file? Does it automatically download instead of displaying, for example? On Mon, Jul 29, 2013 at 9:54 AM, Misharl mon mish...@hotmail.com wrote: Hi Dannon, Thank you very much for replying. The problem is that we cannot display

[galaxy-dev] Galaxy code: data libraries

2013-11-28 Thread Misharl mon
Hi eveybody, Is there a way in the code of Galaxy, to force the users to use link to files without copying in Galaxy by hiding the copy files into Galaxy option in the interface, when they add datasets in their library? We want to avoid users to click on copy files into Galaxy by mistake.

Re: [galaxy-dev] Galaxy code: data libraries

2013-12-02 Thread Misharl mon
selectedLink to files without copying into Galaxy option value=copy_filesCopy files into Galaxy %endif /select Hope this helps! -John On Thu, Nov 28, 2013 at 6:56 AM, Misharl mon

Re: [galaxy-dev] Galaxy code: data libraries

2013-12-05 Thread Misharl mon
without copying into Galaxy option value=copy_filesCopy files into Galaxy %endif /select Hope this helps! -John On Thu, Nov 28, 2013 at 6:56 AM, Misharl mon mish...@hotmail.com wrote

[galaxy-dev] Galaxy Library: problem with directories which are symlinks

2013-12-06 Thread Misharl mon
selectedLink to files without copying into Galaxy option value=copy_filesCopy files into Galaxy %endif /select Hope this helps! -John On Thu, Nov 28, 2013 at 6:56 AM, Misharl