Has anyone gotten galaxy installed on a mac 10.5 with EPD (enthought) python
2.6 (EPD version 6.1-1)? I get this error which I suspect is related to the
fact that I have EPD python, not the generic python that was preinstalled?
Any ideas?
Thanks!
Some eggs are out of date, attempting to fetch..
Yes it works with the default python install. Any way I can get it working
with EPD python?
On Fri, Aug 26, 2011 at 12:43 PM, Nate Coraor wrote:
> Paul Tanger wrote:
> > Has anyone gotten galaxy installed on a mac 10.5 with EPD (enthought)
> python
> > 2.6 (EPD version 6
It is free for academic use. I'll try what you suggested below - thanks!
On Mon, Aug 29, 2011 at 7:59 AM, Nate Coraor wrote:
> Paul Tanger wrote:
> > Yes it works with the default python install. Any way I can get it
> working
> > with EPD python?
>
> I've ne
'/Library/Frameworks/Python.framework/Versions/6.1/lib/python2.6/site-packages/PIL',
'/Users/paultanger/galaxy-dist/lib']
pkg_resources is:
On Mon, Aug 29, 2011 at 8:17 AM, Paul Tanger wrote:
> It is free for academic use. I'll try what you suggested below - th
irement(), ), env,
egg.fetch )
File "/Users/paultanger/galaxy-dist/lib/pkg_resources.py", line 565, in
resolve
raise DistributionNotFound(req) # XXX put more info here
pkg_resources.DistributionNotFound: numpy==1.6.0
Fetch failed.
On Mon, Aug 29, 2011 at 10:18 AM, Nate Coraor wrote:
ldn't be downloaded automatically. You can try
building it by hand with:
python scripts/scramble.py -e pysam
Fetch failed.
On Mon, Aug 29, 2011 at 10:51 AM, Nate Coraor wrote:
> Paul Tanger wrote:
> > Getting somewhere, but it looks like it can't find numpy 1.
I don't know if I did this correctly, but the output from
python get_platforms.py
is:
macosx-10.5-i386-ucs2
On Mon, Aug 29, 2011 at 12:13 PM, Nate Coraor wrote:
> Paul Tanger wrote:
> > That worked, for everything but pysam. I also tried to install it
> directly:
> >
&
Hi,
I'm trying to enable all the emboss tools on a local galaxy install.
I found this tidbit (below) which I thought might help, but when I
look at the tool_conf.xml, I don't see a list of emboss tools to
uncomment.
What should I try next?
Kelly Vincent kpvincent at bx.psu.edu
Fri Jan 14 11:26:3
> http://wiki.g2.bx.psu.edu/Tool%20Shed#Automatic_installation_of_Galaxy_tool_shed_repository_data_types_into_a_local_Galaxy_instance
>
> Greg Von Kuster
>
>
> On Sep 13, 2012, at 4:46 PM, Paul Tanger wrote:
>
>> Hi,
>>
>> I'm trying to enable all the emboss tools on a local galaxy in
mmand?
On Thu, Sep 13, 2012 at 3:58 PM, Greg Von Kuster wrote:
> Hi Paul,
>
> You have to be running the latest Galaxy dist release from
> https://bitbucket.org/galaxy/galaxy-dist in your local Galaxy instance.
> Your repository tip should be e6444e7a1685.
>
> Greg Von Kuster
&g
ature in the next Galaxy
> release.
>
> Greg Von Kuster
>
> On Sep 13, 2012, at 6:15 PM, Paul Tanger wrote:
>
> > Thanks for your help with this. So I updated to the latest version,
> > but didn't read the instructions about creating a tools directory and
> >
So I successfully added the emboss tools to galaxy, but I failed to
create a tool panel section for them.
So I thought I would uninstall them and install them again, this time
creating a tool panel section.
I'm following the instructions here (
http://wiki.g2.bx.psu.edu/Tool%20Shed#Deactivating_and
(Windows NT 6.1; WOW64) AppleWebKit/537.1 (KHTML, like Gecko)
Chrome/21.0.1180.89 Safari/537.1"
129.XX.XX.XX - - [14/Sep/2012:11:43:48 -0700] "GET
/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=f2db41e1fa331b3e
HTTP/1.1" 500 - "
http://129.XX.XX.XX:
ok, I forgot to set a directory for the tool dependencies in the new
install, and once I did that it worked!
On Fri, Sep 14, 2012 at 11:58 AM, Paul Tanger wrote:
> *Not sure if this is what you need, but here is the info from the error
> page. I obscured part of the IP address.*
>
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