Re: [galaxy-dev] Attempting to bind to AMQP message queue, but kombu dependency unavailable

2014-02-18 Thread John Chilton 
That should be fixed now, sorry about that.

-John

On Tue, Feb 18, 2014 at 6:07 AM, Peter Cock  wrote:
> On Tue, Feb 18, 2014 at 12:00 PM, Peter Cock 
> wrote:
>>
>> Hi all,
>>
>> I just updated my development server, and ran into what looks
>> like a missing dependency:
>>
>> $ ./run.sh
>> ...
>> galaxy.jobs.manager DEBUG 2014-02-18 11:58:06,422 Starting job handler
>> galaxy.jobs INFO 2014-02-18 11:58:06,422 Handler 'main' will load all
>> configured runner plugins
>> galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,423 Starting 5 LocalRunner
>> workers
>> galaxy.jobs DEBUG 2014-02-18 11:58:06,425 Loaded job runner
>> 'galaxy.jobs.runners.local:LocalJobRunner' as 'local'
>> galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,460 Starting 3 LWRRunner
>> workers
>> Traceback (most recent call last):
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/webapps/galaxy/buildapp.py",
>> line 39, in app_factory
>> app = UniverseApplication( global_conf = global_conf, **kwargs )
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/app.py", line 130, in
>> __init__
>> self.job_manager = manager.JobManager( self )
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/manager.py", line 31,
>> in __init__
>> self.job_handler = handler.JobHandler( app )
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 31,
>> in __init__
>> self.dispatcher = DefaultJobDispatcher( app )
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 576,
>> in __init__
>> self.job_runners = self.app.job_config.get_job_runner_plugins(
>> self.app.config.server_name )
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py", line 496,
>> in get_job_runner_plugins
>> rval[id] = runner_class( self.app, runner[ 'workers' ], **runner.get(
>> 'kwds', {} ) )
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr.py", line
>> 45, in __init__
>> self.client_manager = build_client_manager(**client_manager_kwargs)
>>   File
>> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
>> line 41, in build_client_manager
>> return MessageQueueClientManager(**kwargs)
>>   File
>> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
>> line 89, in __init__
>> self.exchange = LwrExchange(self.url, self.manager_name)
>>   File
>> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/amqp_exchange.py",
>> line 37, in __init__
>> raise Exception(KOMBU_UNAVAILABLE)
>> Exception: Attempting to bind to AMQP message queue, but kombu dependency
>> unavailable
>>
>>
>> $ hg summary
>> parent: 13557:75b13d642f94 tip
>>  Allow LWR runner to publish/consume messages via message queue.
>> branch: default
>> commit: 9 modified, 240 unknown
>> update: (current)
>>
>> (Local modifications mostly extra logging lines; nothing which
>> looked relevant here)
>>
>> Regards,
>>
>> Peter
>
>
>
> Also (not unexpectedly) breaking my TravisCI tool tests, e.g.
> https://travis-ci.org/peterjc/pico_galaxy/builds/19101036
>
> Peter
>
>
> ___
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Re: [galaxy-dev] Attempting to bind to AMQP message queue, but kombu dependency unavailable

2014-02-18 Thread Peter Cock 
Hi John,

Fix confirmed - nice timing, I just finished my lunch break :)

Thanks!

Peter


On Tue, Feb 18, 2014 at 12:35 PM, John Chilton  wrote:

> That should be fixed now, sorry about that.
>
> -John
>
> On Tue, Feb 18, 2014 at 6:07 AM, Peter Cock 
> wrote:
> > On Tue, Feb 18, 2014 at 12:00 PM, Peter Cock 
> > wrote:
> >>
> >> Hi all,
> >>
> >> I just updated my development server, and ran into what looks
> >> like a missing dependency:
> >>
> >> $ ./run.sh
> >> ...
> >> galaxy.jobs.manager DEBUG 2014-02-18 11:58:06,422 Starting job handler
> >> galaxy.jobs INFO 2014-02-18 11:58:06,422 Handler 'main' will load all
> >> configured runner plugins
> >> galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,423 Starting 5 LocalRunner
> >> workers
> >> galaxy.jobs DEBUG 2014-02-18 11:58:06,425 Loaded job runner
> >> 'galaxy.jobs.runners.local:LocalJobRunner' as 'local'
> >> galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,460 Starting 3 LWRRunner
> >> workers
> >> Traceback (most recent call last):
> >>   File
> "/mnt/galaxy/galaxy-central/lib/galaxy/webapps/galaxy/buildapp.py",
> >> line 39, in app_factory
> >> app = UniverseApplication( global_conf = global_conf, **kwargs )
> >>   File "/mnt/galaxy/galaxy-central/lib/galaxy/app.py", line 130, in
> >> __init__
> >> self.job_manager = manager.JobManager( self )
> >>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/manager.py", line 31,
> >> in __init__
> >> self.job_handler = handler.JobHandler( app )
> >>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 31,
> >> in __init__
> >> self.dispatcher = DefaultJobDispatcher( app )
> >>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line
> 576,
> >> in __init__
> >> self.job_runners = self.app.job_config.get_job_runner_plugins(
> >> self.app.config.server_name )
> >>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py", line
> 496,
> >> in get_job_runner_plugins
> >> rval[id] = runner_class( self.app, runner[ 'workers' ],
> **runner.get(
> >> 'kwds', {} ) )
> >>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr.py", line
> >> 45, in __init__
> >> self.client_manager = build_client_manager(**client_manager_kwargs)
> >>   File
> >>
> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
> >> line 41, in build_client_manager
> >> return MessageQueueClientManager(**kwargs)
> >>   File
> >>
> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
> >> line 89, in __init__
> >> self.exchange = LwrExchange(self.url, self.manager_name)
> >>   File
> >>
> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/amqp_exchange.py",
> >> line 37, in __init__
> >> raise Exception(KOMBU_UNAVAILABLE)
> >> Exception: Attempting to bind to AMQP message queue, but kombu
> dependency
> >> unavailable
> >>
> >>
> >> $ hg summary
> >> parent: 13557:75b13d642f94 tip
> >>  Allow LWR runner to publish/consume messages via message queue.
> >> branch: default
> >> commit: 9 modified, 240 unknown
> >> update: (current)
> >>
> >> (Local modifications mostly extra logging lines; nothing which
> >> looked relevant here)
> >>
> >> Regards,
> >>
> >> Peter
> >
> >
> >
> > Also (not unexpectedly) breaking my TravisCI tool tests, e.g.
> > https://travis-ci.org/peterjc/pico_galaxy/builds/19101036
> >
> > Peter
> >
> >
> > ___
> > Please keep all replies on the list by using "reply all"
> > in your mail client.  To manage your subscriptions to this
> > and other Galaxy lists, please use the interface at:
> >   http://lists.bx.psu.edu/
> >
> > To search Galaxy mailing lists use the unified search at:
> >   http://galaxyproject.org/search/mailinglists/
>
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Re: [galaxy-dev] Attempting to bind to AMQP message queue, but kombu dependency unavailable

2014-02-18 Thread Peter Cock 
On Tue, Feb 18, 2014 at 12:00 PM, Peter Cock wrote:

> Hi all,
>
> I just updated my development server, and ran into what looks
> like a missing dependency:
>
> $ ./run.sh
> ...
> galaxy.jobs.manager DEBUG 2014-02-18 11:58:06,422 Starting job handler
> galaxy.jobs INFO 2014-02-18 11:58:06,422 Handler 'main' will load all
> configured runner plugins
> galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,423 Starting 5 LocalRunner
> workers
> galaxy.jobs DEBUG 2014-02-18 11:58:06,425 Loaded job runner
> 'galaxy.jobs.runners.local:LocalJobRunner' as 'local'
> galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,460 Starting 3 LWRRunner
> workers
> Traceback (most recent call last):
>   File "/mnt/galaxy/galaxy-central/lib/galaxy/webapps/galaxy/buildapp.py",
> line 39, in app_factory
> app = UniverseApplication( global_conf = global_conf, **kwargs )
>   File "/mnt/galaxy/galaxy-central/lib/galaxy/app.py", line 130, in
> __init__
> self.job_manager = manager.JobManager( self )
>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/manager.py", line 31,
> in __init__
> self.job_handler = handler.JobHandler( app )
>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 31,
> in __init__
> self.dispatcher = DefaultJobDispatcher( app )
>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 576,
> in __init__
> self.job_runners = self.app.job_config.get_job_runner_plugins(
> self.app.config.server_name )
>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py", line 496,
> in get_job_runner_plugins
> rval[id] = runner_class( self.app, runner[ 'workers' ], **runner.get(
> 'kwds', {} ) )
>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr.py", line
> 45, in __init__
> self.client_manager = build_client_manager(**client_manager_kwargs)
>   File
> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
> line 41, in build_client_manager
> return MessageQueueClientManager(**kwargs)
>   File
> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
> line 89, in __init__
> self.exchange = LwrExchange(self.url, self.manager_name)
>   File
> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/amqp_exchange.py",
> line 37, in __init__
> raise Exception(KOMBU_UNAVAILABLE)
> Exception: Attempting to bind to AMQP message queue, but kombu dependency
> unavailable
>
>
> $ hg summary
> parent: 13557:75b13d642f94 tip
>  Allow LWR runner to publish/consume messages via message queue.
> branch: default
> commit: 9 modified, 240 unknown
> update: (current)
>
> (Local modifications mostly extra logging lines; nothing which
> looked relevant here)
>
> Regards,
>
> Peter
>


Also (not unexpectedly) breaking my TravisCI tool tests, e.g.
https://travis-ci.org/peterjc/pico_galaxy/builds/19101036

Peter
___
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[galaxy-dev] Attempting to bind to AMQP message queue, but kombu dependency unavailable

2014-02-18 Thread Peter Cock 
Hi all,

I just updated my development server, and ran into what looks
like a missing dependency:

$ ./run.sh
...
galaxy.jobs.manager DEBUG 2014-02-18 11:58:06,422 Starting job handler
galaxy.jobs INFO 2014-02-18 11:58:06,422 Handler 'main' will load all
configured runner plugins
galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,423 Starting 5 LocalRunner
workers
galaxy.jobs DEBUG 2014-02-18 11:58:06,425 Loaded job runner
'galaxy.jobs.runners.local:LocalJobRunner' as 'local'
galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,460 Starting 3 LWRRunner
workers
Traceback (most recent call last):
  File "/mnt/galaxy/galaxy-central/lib/galaxy/webapps/galaxy/buildapp.py",
line 39, in app_factory
app = UniverseApplication( global_conf = global_conf, **kwargs )
  File "/mnt/galaxy/galaxy-central/lib/galaxy/app.py", line 130, in __init__
self.job_manager = manager.JobManager( self )
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/manager.py", line 31, in
__init__
self.job_handler = handler.JobHandler( app )
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 31, in
__init__
self.dispatcher = DefaultJobDispatcher( app )
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 576,
in __init__
self.job_runners = self.app.job_config.get_job_runner_plugins(
self.app.config.server_name )
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py", line 496,
in get_job_runner_plugins
rval[id] = runner_class( self.app, runner[ 'workers' ], **runner.get(
'kwds', {} ) )
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr.py", line
45, in __init__
self.client_manager = build_client_manager(**client_manager_kwargs)
  File
"/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
line 41, in build_client_manager
return MessageQueueClientManager(**kwargs)
  File
"/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
line 89, in __init__
self.exchange = LwrExchange(self.url, self.manager_name)
  File
"/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/amqp_exchange.py",
line 37, in __init__
raise Exception(KOMBU_UNAVAILABLE)
Exception: Attempting to bind to AMQP message queue, but kombu dependency
unavailable


$ hg summary
parent: 13557:75b13d642f94 tip
 Allow LWR runner to publish/consume messages via message queue.
branch: default
commit: 9 modified, 240 unknown
update: (current)

(Local modifications mostly extra logging lines; nothing which
looked relevant here)

Regards,

Peter
___
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in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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