Hello Vipin,
I opened a ticket at bitbucket for this type of search in Trackster.
Please feel free to add detail to the enhancement request.
http://bitbucket.org/galaxy/galaxy-central/issue/611/search-in-trackster-by-feature-id-or-name
Thanks!
Jen
Galaxy team
On 7/11/11 9:11 AM, Vipin TS wr
Hi Jeremy,
Sorry for the delayed response from my side.
(1) click the pencil on a BAM dataset;
> (2) try converting from BAM to BAI;
>
> If the conversion failed, you should receive an informative error message
> about why it's failing. Once you get this conversion to pass, you should be
> able
>
> Yes, all BAM fails are failing with the same error message. Before updating
> my
> instance I did not try to visualize through Trackster. Samtools path are
> available to
> Galaxy. I am not seeing any error/warning message in my log file.
Try this in the main interface:
(1) click the pe
Hi Kanwei,
Is this from a recent changeset that you pulled?
>
>
Yes I pulled on yesterday (6-7-2011)
--Vipin
___
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other G
Hi Jeremy,
> Are you able to visualize any BAM files in Trackster or do all files fail
> with the same error? Were you able to visualize BAM files before you updated
> your instance? Do you have SAMTools--which is required by
> Trackster--installed and available via your path?
>
>
>
Yes, all BAM
Is this from a recent changeset that you pulled?
On Wed, Jul 6, 2011 at 2:19 PM, Vipin TS wrote:
> Hi Galaxy team,
>
> I am experiencing a problem with visualizing my BAM files through Trackster
> at my Galaxy instance. Please find the attached image along with this mail.
> From the log file I am
Vipin,
Are you able to visualize any BAM files in Trackster or do all files fail with
the same error? Were you able to visualize BAM files before you updated your
instance? Do you have SAMTools--which is required by Trackster--installed and
available via your path?
J.
On Jul 6, 2011, at 2:19
Hi Galaxy team,
I am experiencing a problem with visualizing my BAM files through Trackster
at my Galaxy instance. Please find the attached image along with this mail.
>From the log file I am not seeing any clues about the error message which is
displayed on my browser page (A dependency (bai) wa
