Re: [galaxy-dev] Can't edit galaxy workflow
Hi, Can you please send the entire link to access this changeset? I keep searching for 5013377e0bf7 but can not find it. Thanks in advance, Liisa From: Dannon Baker dannonba...@me.com To: Sanjarbek Hudaiberdiev hudai...@icgeb.org Cc: galaxy-...@bx.psu.edu Date: 13/11/2012 12:34 PM Subject:Re: [galaxy-dev] Can't edit galaxy workflow Sent by:galaxy-dev-boun...@lists.bx.psu.edu Sanjar, This is fixed as of 5013377e0bf7. This may not be in the next distribution, but will be in the one after that. Of course, you can manually pull the change from galaxy-central at any time. -Dannon On Nov 13, 2012, at 9:45 AM, Sanjarbek Hudaiberdiev hudai...@icgeb.org wrote: I tried to reply to similar posts, but couldn't figure out how to do it. So posting again: Galaxy giving this error when editing workflow, just after creating workflow from existing history: URL: http://localhost/galaxy/workflow/load_workflow?id=df7a1f0c02a5b08e_=1352817462148 Module weberror.evalexception.middleware:364 in respond app_iter = self.application(environ, detect_start_response) Module paste.debug.prints:98 in __call__ environ, self.app) Module paste.wsgilib:539 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ return self.application(environ, start_response) Module paste.httpexceptions:632 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ body = method( trans, **kwargs ) Module galaxy.web.framework:73 in decorator return simplejson.dumps( func( self, trans, *args, **kwargs ) ) Module galaxy.webapps.galaxy.controllers.workflow:733 in load_workflow 'tooltip': module.get_tooltip( static_path=url_for( '/static' ) ), Module galaxy.workflow.modules:258 in get_tooltip return self.tool.help.render( static_path=static_path ) AttributeError: 'NoneType' object has no attribute 'render' Could anyone help me to solve this problem? Thanks, Sanjar. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Can't edit galaxy workflow
Bitbucket will only show the first 7 characters when browsing through commits. Try this: https://bitbucket.org/galaxy/galaxy-central/changeset/5013377e0bf7a656ea593098f1d1b38f3d6928c6 -Scott - Original Message - Hi, Can you please send the entire link to access this changeset? I keep searching for 5013377e0bf7 but can not find it. Thanks in advance, Liisa From: Dannon Baker dannonba...@me.com To: Sanjarbek Hudaiberdiev hudai...@icgeb.org Cc: galaxy-...@bx.psu.edu Date: 13/11/2012 12:34 PM Subject: Re: [galaxy-dev] Can't edit galaxy workflow Sent by: galaxy-dev-boun...@lists.bx.psu.edu Sanjar, This is fixed as of 5013377e0bf7. This may not be in the next distribution, but will be in the one after that. Of course, you can manually pull the change from galaxy-central at any time. -Dannon On Nov 13, 2012, at 9:45 AM, Sanjarbek Hudaiberdiev hudai...@icgeb.org wrote: I tried to reply to similar posts, but couldn't figure out how to do it. So posting again: Galaxy giving this error when editing workflow, just after creating workflow from existing history: URL: http://localhost/galaxy/workflow/load_workflow?id=df7a1f0c02a5b08e_=1352817462148 Module weberror.evalexception.middleware:364 in respond app_iter = self.application(environ, detect_start_response) Module paste.debug.prints:98 in __call__ environ, self.app) Module paste.wsgilib:539 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ return self.application(environ, start_response) Module paste.httpexceptions:632 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ body = method( trans, **kwargs ) Module galaxy.web.framework:73 in decorator return simplejson.dumps( func( self, trans, *args, **kwargs ) ) Module galaxy.webapps.galaxy.controllers.workflow:733 in load_workflow 'tooltip': module.get_tooltip( static_path=url_for( '/static' ) ), Module galaxy.workflow.modules:258 in get_tooltip return self.tool.help.render( static_path=static_path ) AttributeError: 'NoneType' object has no attribute 'render' Could anyone help me to solve this problem? Thanks, Sanjar. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Can't edit galaxy workflow
Dannon, I wanted to apply the patch as well on our fresh instance. But it fails with the error of uncomitted changes.. But we only pull/merge/update using hg nothing else we do with itany clues? We only locally modified files of course (like the wsgi.ini files and loc files). $ hg patch --no-commit modulefix.patch abort: outstanding uncommitted changes Alex -Oorspronkelijk bericht- Van: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-boun...@lists.bx.psu.edu] Namens Dannon Baker Verzonden: woensdag 14 november 2012 14:18 Aan: Sanjarbek Hudaiberdiev CC: galaxy-...@bx.psu.edu Onderwerp: Re: [galaxy-dev] Can't edit galaxy workflow This changeset is only in galaxy-central, at the moment, and not galaxy-dist. You have a few options here: Pull directly from -central to the revision indicated (though this means you will be updating your instance to less thoroughly tested galaxy-central code): hg pull -u -r 5013377e0bf7 http://bitbucket.org/galaxy/galaxy-central/ Or, probably preferable to that, you could apply just the individual changeset as a patch (which will merge in silently when you do update -dist). Simply execute the following within your galaxy-dist directory: curl https://bitbucket.org/galaxy/galaxy-central/changeset/5013377e0bf7/raw modulefix.patch hg patch --no-commit modulefix.patch -Dannon On Nov 14, 2012, at 8:04 AM, Sanjarbek Hudaiberdiev hudai...@icgeb.org wrote: Thanks a lot Dannon, for your reply. But hg keeps saying following when I try to pull: abort: unknown revision '5013377e0bf7'! Is there any other way of manually getting it? (Sorry, I'm not an expert on those new SCMs) Sanjar. On 11/13/2012 06:33 PM, Dannon Baker wrote: Sanjar, This is fixed as of 5013377e0bf7. This may not be in the next distribution, but will be in the one after that. Of course, you can manually pull the change from galaxy-central at any time. -Dannon On Nov 13, 2012, at 9:45 AM, Sanjarbek Hudaiberdiev hudai...@icgeb.org wrote: I tried to reply to similar posts, but couldn't figure out how to do it. So posting again: Galaxy giving this error when editing workflow, just after creating workflow from existing history: URL: http://localhost/galaxy/workflow/load_workflow?id=df7a1f0c02a5b08e_ =1352817462148 Module weberror.evalexception.middleware:364 in respond app_iter = self.application(environ, detect_start_response) Module paste.debug.prints:98 in __call__ environ, self.app) Module paste.wsgilib:539 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ return self.application(environ, start_response) Module paste.httpexceptions:632 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ body = method( trans, **kwargs ) Module galaxy.web.framework:73 in decorator return simplejson.dumps( func( self, trans, *args, **kwargs ) ) Module galaxy.webapps.galaxy.controllers.workflow:733 in load_workflow 'tooltip': module.get_tooltip( static_path=url_for( '/static' ) ), Module galaxy.workflow.modules:258 in get_tooltip return self.tool.help.render( static_path=static_path ) AttributeError: 'NoneType' object has no attribute 'render' Could anyone help me to solve this problem? Thanks, Sanjar. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Can't edit galaxy workflow
This changeset is only in galaxy-central, at the moment, and not galaxy-dist. You have a few options here: Pull directly from -central to the revision indicated (though this means you will be updating your instance to less thoroughly tested galaxy-central code): hg pull -u -r 5013377e0bf7 http://bitbucket.org/galaxy/galaxy-central/ Or, probably preferable to that, you could apply just the individual changeset as a patch (which will merge in silently when you do update -dist). Simply execute the following within your galaxy-dist directory: curl https://bitbucket.org/galaxy/galaxy-central/changeset/5013377e0bf7/raw modulefix.patch hg patch --no-commit modulefix.patch -Dannon On Nov 14, 2012, at 8:04 AM, Sanjarbek Hudaiberdiev hudai...@icgeb.org wrote: Thanks a lot Dannon, for your reply. But hg keeps saying following when I try to pull: abort: unknown revision '5013377e0bf7'! Is there any other way of manually getting it? (Sorry, I'm not an expert on those new SCMs) Sanjar. On 11/13/2012 06:33 PM, Dannon Baker wrote: Sanjar, This is fixed as of 5013377e0bf7. This may not be in the next distribution, but will be in the one after that. Of course, you can manually pull the change from galaxy-central at any time. -Dannon On Nov 13, 2012, at 9:45 AM, Sanjarbek Hudaiberdiev hudai...@icgeb.org wrote: I tried to reply to similar posts, but couldn't figure out how to do it. So posting again: Galaxy giving this error when editing workflow, just after creating workflow from existing history: URL: http://localhost/galaxy/workflow/load_workflow?id=df7a1f0c02a5b08e_=1352817462148 Module weberror.evalexception.middleware:364 in respond app_iter = self.application(environ, detect_start_response) Module paste.debug.prints:98 in __call__ environ, self.app) Module paste.wsgilib:539 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ return self.application(environ, start_response) Module paste.httpexceptions:632 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ body = method( trans, **kwargs ) Module galaxy.web.framework:73 in decorator return simplejson.dumps( func( self, trans, *args, **kwargs ) ) Module galaxy.webapps.galaxy.controllers.workflow:733 in load_workflow 'tooltip': module.get_tooltip( static_path=url_for( '/static' ) ), Module galaxy.workflow.modules:258 in get_tooltip return self.tool.help.render( static_path=static_path ) AttributeError: 'NoneType' object has no attribute 'render' Could anyone help me to solve this problem? Thanks, Sanjar. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Can't edit galaxy workflow
Thanks a lot Dannon, for your reply. But hg keeps saying following when I try to pull: abort: unknown revision '5013377e0bf7'! Is there any other way of manually getting it? (Sorry, I'm not an expert on those new SCMs) Sanjar. On 11/13/2012 06:33 PM, Dannon Baker wrote: Sanjar, This is fixed as of 5013377e0bf7. This may not be in the next distribution, but will be in the one after that. Of course, you can manually pull the change from galaxy-central at any time. -Dannon On Nov 13, 2012, at 9:45 AM, Sanjarbek Hudaiberdiev hudai...@icgeb.org wrote: I tried to reply to similar posts, but couldn't figure out how to do it. So posting again: Galaxy giving this error when editing workflow, just after creating workflow from existing history: URL: http://localhost/galaxy/workflow/load_workflow?id=df7a1f0c02a5b08e_=1352817462148 Module weberror.evalexception.middleware:364 in respond app_iter = self.application(environ, detect_start_response) Module paste.debug.prints:98 in __call__ environ, self.app) Module paste.wsgilib:539 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ return self.application(environ, start_response) Module paste.httpexceptions:632 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ body = method( trans, **kwargs ) Module galaxy.web.framework:73 in decorator return simplejson.dumps( func( self, trans, *args, **kwargs ) ) Module galaxy.webapps.galaxy.controllers.workflow:733 in load_workflow 'tooltip': module.get_tooltip( static_path=url_for( '/static' ) ), Module galaxy.workflow.modules:258 in get_tooltip return self.tool.help.render( static_path=static_path ) AttributeError: 'NoneType' object has no attribute 'render' Could anyone help me to solve this problem? Thanks, Sanjar. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Can't edit galaxy workflow
Make sure that you are pulling from galaxy-central and not galaxy-dist. I believe something like: hg pull -r rev# -u http://bitbucket.org/galaxy/galaxy-central should work. The problem may be that you are pointing to galaxy-dist by default, which will not know about that revision (yet). -Scott - Original Message - Thanks a lot Dannon, for your reply. But hg keeps saying following when I try to pull: abort: unknown revision '5013377e0bf7'! Is there any other way of manually getting it? (Sorry, I'm not an expert on those new SCMs) Sanjar. On 11/13/2012 06:33 PM, Dannon Baker wrote: Sanjar, This is fixed as of 5013377e0bf7. This may not be in the next distribution, but will be in the one after that. Of course, you can manually pull the change from galaxy-central at any time. -Dannon On Nov 13, 2012, at 9:45 AM, Sanjarbek Hudaiberdiev hudai...@icgeb.org wrote: I tried to reply to similar posts, but couldn't figure out how to do it. So posting again: Galaxy giving this error when editing workflow, just after creating workflow from existing history: URL: http://localhost/galaxy/workflow/load_workflow?id=df7a1f0c02a5b08e_=1352817462148 Module weberror.evalexception.middleware:364 in respond app_iter = self.application(environ, detect_start_response) Module paste.debug.prints:98 in __call__ environ, self.app) Module paste.wsgilib:539 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ return self.application(environ, start_response) Module paste.httpexceptions:632 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ body = method( trans, **kwargs ) Module galaxy.web.framework:73 in decorator return simplejson.dumps( func( self, trans, *args, **kwargs ) ) Module galaxy.webapps.galaxy.controllers.workflow:733 in load_workflow 'tooltip': module.get_tooltip( static_path=url_for( '/static' ) ), Module galaxy.workflow.modules:258 in get_tooltip return self.tool.help.render( static_path=static_path ) AttributeError: 'NoneType' object has no attribute 'render' Could anyone help me to solve this problem? Thanks, Sanjar. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Can't edit galaxy workflow
I tried to reply to similar posts, but couldn't figure out how to do it. So posting again: Galaxy giving this error when editing workflow, just after creating workflow from existing history: URL:http://localhost/galaxy/workflow/load_workflow?id=df7a1f0c02a5b08e_=1352817462148 Moduleweberror.evalexception.middleware:*364*in|respond| | http://localhost/galaxy/workflow/editor?id=df7a1f0c02a5b08e#app_iter*=*self*.*application*(*environ*,*detect_start_response*)*| Modulepaste.debug.prints:*98*in|__call__| | http://localhost/galaxy/workflow/editor?id=df7a1f0c02a5b08e#environ*,*self*.*app*)*| Modulepaste.wsgilib:*539*in|intercept_output| | http://localhost/galaxy/workflow/editor?id=df7a1f0c02a5b08e#app_iter*=*application*(*environ*,*replacement_start_response*)*| Modulepaste.recursive:*80*in|__call__| | http://localhost/galaxy/workflow/editor?id=df7a1f0c02a5b08e#*return*self*.*application*(*environ*,*start_response*)*| Modulepaste.httpexceptions:*632*in|__call__| | http://localhost/galaxy/workflow/editor?id=df7a1f0c02a5b08e#*return*self*.*application*(*environ*,*start_response*)*| Modulegalaxy.web.framework.base:*160*in|__call__| | http://localhost/galaxy/workflow/editor?id=df7a1f0c02a5b08e#body*=*method*(*trans*,*kwargs*)*| Modulegalaxy.web.framework:*73*in|decorator| | http://localhost/galaxy/workflow/editor?id=df7a1f0c02a5b08e#*return*simplejson*.*dumps*(*func*(*self*,*trans*,args*,*kwargs*)**)*| Modulegalaxy.webapps.galaxy.controllers.workflow:*733*in|load_workflow| | http://localhost/galaxy/workflow/editor?id=df7a1f0c02a5b08e#'tooltip'*:*module*.*get_tooltip*(*static_path*=*url_for*(*'/static'*)**)**,*| Modulegalaxy.workflow.modules:*258*in|get_tooltip| | http://localhost/galaxy/workflow/editor?id=df7a1f0c02a5b08e#*return*self*.*tool*.*help*.*render*(*static_path*=*static_path*)*| *AttributeError: 'NoneType' object has no attribute 'render'* Could anyone help me to solve this problem? Thanks, Sanjar. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Can't edit galaxy workflow
Richard, This is fixed as of 5013377e0bf7. This may not be in the next distribution, but will be in the one after that. Of course, you can manually pull the change at any time. -Dannon On Nov 9, 2012, at 4:20 PM, Richard Park rp...@bu.edu wrote: Hi Guys, I updated to the latest galaxy distribution today and I cant seem to edit existing workflows. I've seen others with this error from a Sept 07 distribution (http://dev.list.galaxyproject.org/Can-t-edit-Galaxy-Workflow-ElementInterface-instance-has-no-attribute-render-td4656393.html), but Jeremy Goecks mentioned that this might of been fixed in the Sept 20 distribution. Any ideas on how to fix this? Thanks, Richard Server error URL: http://127.0.0.1:8080/workflow/load_workflow?id=f597429621d6eb2b_=1352495509531 Module weberror.evalexception.middleware:364 in respond app_iter = self.application(environ, detect_start_response) Module paste.debug.prints:98 in __call__ environ, self.app) Module paste.wsgilib:539 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ return self.application(environ, start_response) Module paste.httpexceptions:632 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ body = method( trans, **kwargs ) Module galaxy.web.framework:73 in decorator return simplejson.dumps( func( self, trans, *args, **kwargs ) ) Module galaxy.webapps.galaxy.controllers.workflow:733 in load_workflow 'tooltip': module.get_tooltip( static_path=url_for( '/static' ) ), Module galaxy.workflow.modules:258 in get_tooltip return self.tool.help.render( static_path=static_path ) AttributeError: 'NoneType' object has no attribute 'render' [] ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Can't edit galaxy workflow
Sanjar, This is fixed as of 5013377e0bf7. This may not be in the next distribution, but will be in the one after that. Of course, you can manually pull the change from galaxy-central at any time. -Dannon On Nov 13, 2012, at 9:45 AM, Sanjarbek Hudaiberdiev hudai...@icgeb.org wrote: I tried to reply to similar posts, but couldn't figure out how to do it. So posting again: Galaxy giving this error when editing workflow, just after creating workflow from existing history: URL: http://localhost/galaxy/workflow/load_workflow?id=df7a1f0c02a5b08e_=1352817462148 Module weberror.evalexception.middleware:364 in respond app_iter = self.application(environ, detect_start_response) Module paste.debug.prints:98 in __call__ environ, self.app) Module paste.wsgilib:539 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ return self.application(environ, start_response) Module paste.httpexceptions:632 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ body = method( trans, **kwargs ) Module galaxy.web.framework:73 in decorator return simplejson.dumps( func( self, trans, *args, **kwargs ) ) Module galaxy.webapps.galaxy.controllers.workflow:733 in load_workflow 'tooltip': module.get_tooltip( static_path=url_for( '/static' ) ), Module galaxy.workflow.modules:258 in get_tooltip return self.tool.help.render( static_path=static_path ) AttributeError: 'NoneType' object has no attribute 'render' Could anyone help me to solve this problem? Thanks, Sanjar. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Can't edit galaxy workflow
Hi Guys, I updated to the latest galaxy distribution today and I cant seem to edit existing workflows. I've seen others with this error from a Sept 07 distribution ( http://dev.list.galaxyproject.org/Can-t-edit-Galaxy-Workflow-ElementInterface-instance-has-no-attribute-render-td4656393.html), but Jeremy Goecks mentioned that this might of been fixed in the Sept 20 distribution. Any ideas on how to fix this? Thanks, Richard Server error URL: http://127.0.0.1:8080/workflow/load_workflow?id=f597429621d6eb2b_=1352495509531 Module weberror.evalexception.middleware:*364* in respond http://127.0.0.1:8080/workflow/editor?id=f597429621d6eb2b#app_iter *= * self*.*application*(*environ*,* detect_start_response*)* Module paste.debug.prints:*98* in __call__ http://127.0.0.1:8080/workflow/editor?id=f597429621d6eb2b#environ*,* self*.*app*)* Module paste.wsgilib:*539* in intercept_output http://127.0.0.1:8080/workflow/editor?id=f597429621d6eb2b#app_iter *= * application*(*environ*,* replacement_start_response*)* Module paste.recursive:*80* in __call__ http://127.0.0.1:8080/workflow/editor?id=f597429621d6eb2b#*return* self*.*application*(*environ*,* start_response*)* Module paste.httpexceptions:*632* in __call__ http://127.0.0.1:8080/workflow/editor?id=f597429621d6eb2b#*return* self*.*application*(*environ*,* start_response*)* Module galaxy.web.framework.base:*160* in __call__ http://127.0.0.1:8080/workflow/editor?id=f597429621d6eb2b#body *=* method*(* trans*,* kwargs *)* Module galaxy.web.framework:*73* in decorator http://127.0.0.1:8080/workflow/editor?id=f597429621d6eb2b#*return* simplejson*.*dumps*(* func*(* self*,* trans*,* ***args*,* kwargs *)* *)* Module galaxy.webapps.galaxy.controllers.workflow:*733* in load_workflow http://127.0.0.1:8080/workflow/editor?id=f597429621d6eb2b#'tooltip'*: * module*.*get_tooltip*(* static_path*=*url_for*(* '/static' *)* *)**,* Module galaxy.workflow.modules:*258* in get_tooltip http://127.0.0.1:8080/workflow/editor?id=f597429621d6eb2b#*return* self*.*tool*.*help*.*render*(* static_path*=*static_path *)* *AttributeError: 'NoneType' object has no attribute 'render'* [] ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Can't edit Galaxy Workflow _ElementInterface instance has no attribute 'render'
Liisa, My best guess is that this is fixed in the most recent distribution. Can you please update your Galaxy instance to the Sept. 20 distribution and see if that fixes the problem. If not, please let us know. Thanks, J. On Sep 24, 2012, at 11:57 AM, Liisa Koski wrote: Hello, After updating to the Sept. 07 distribution I am having problems editing an existing workflow. Server error URL: http:galaxy_url/workflow/load_workflow?id=ba751ee0539fff04_=1348501448807 Module paste.exceptions.errormiddleware:143 in __call__ app_iter = self.application(environ, start_response) Module paste.debug.prints:98 in __call__ environ, self.app) Module paste.wsgilib:539 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ return self.application(environ, start_response) Module paste.httpexceptions:632 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ body = method( trans, **kwargs ) Module galaxy.web.framework:69 in decorator return simplejson.dumps( func( self, trans, *args, **kwargs ) ) Module galaxy.web.controllers.workflow:735 in load_workflow 'tooltip': module.get_tooltip( static_path=url_for( '/static' ) ), Module galaxy.workflow.modules:262 in get_tooltip return self.tool.help.render( static_path=static_path ) AttributeError: _ElementInterface instance has no attribute 'render' Any help would be much appreciated. Thanks in advance, Liisa ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Can't edit Galaxy Workflow _ElementInterface instance has no attribute 'render'
Hello, After updating to the Sept. 07 distribution I am having problems editing an existing workflow. Server error URL: http:galaxy_url/workflow/load_workflow?id=ba751ee0539fff04_=1348501448807 Module paste.exceptions.errormiddleware:143 in __call__ app_iter = self.application(environ, start_response) Module paste.debug.prints:98 in __call__ environ, self.app) Module paste.wsgilib:539 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ return self.application(environ, start_response) Module paste.httpexceptions:632 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ body = method( trans, **kwargs ) Module galaxy.web.framework:69 in decorator return simplejson.dumps( func( self, trans, *args, **kwargs ) ) Module galaxy.web.controllers.workflow:735 in load_workflow 'tooltip': module.get_tooltip( static_path=url_for( '/static' ) ), Module galaxy.workflow.modules:262 in get_tooltip return self.tool.help.render( static_path=static_path ) AttributeError: _ElementInterface instance has no attribute 'render' Any help would be much appreciated. Thanks in advance, Liisa ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
