Re: [galaxy-dev] Cloud Launch - Where is /mnt/galaxyData
Perfect thanks! On Mon, Jan 6, 2014 at 1:16 PM, Dannon Baker wrote: > Hey Greg, > > Sorry about the delay on this over the holidays. I see what you're working > with now. If you install your customizations in a portable manner in > /mnt/galaxyData that should be safe and we'll make sure to provide a smooth > migration path going forward should that change. Only 'galaxy' type > clusters will have /mnt/galaxy and data only clusters should continue to > work just fine with /mnt/galaxyData. > > -Dannon > > > On Mon, Dec 30, 2013 at 1:33 PM, greg wrote: >> >> Just following up on this. So it's ok to do all of my customizations >> in /mnt/galaxyData? >> >> Or am I doing something wrong, and I need to figure out how to boot up >> into a version that has /mnt/galaxy? >> >> Thanks again, >> >> Greg >> >> On Fri, Dec 20, 2013 at 2:49 PM, greg wrote: >> > Yes, I just launched it a few hours ago. >> > >> > I just went here and filled out the form: >> > https://usegalaxy.org/cloudlaunch >> > >> > I chose "data cluster" when prompted and enter 5GB. >> > >> > >> > On Fri, Dec 20, 2013 at 2:48 PM, Dannon Baker >> > wrote: >> >> And is this a new instance you've just launched? If so, how'd you >> >> launch >> >> it? >> >> >> >> >> >> On Fri, Dec 20, 2013 at 2:37 PM, greg wrote: >> >>> >> >>> Here's what I'm seeing: >> >>> >> >>> ubuntu@ip-10-182-195-79:/$ ls / >> >>> bin boot dev etc export home initrd.img lib lib64 lost+found >> >>> media mnt opt proc root run sbin selinux srv sys tmp usr >> >>> var vmlinuz >> >>> ubuntu@ip-10-182-195-79:/$ ls mnt >> >>> cm galaxyData lost+found transient_nfs >> >>> ubuntu@ip-10-182-195-79:/$ ls /mnt/galaxyData/ >> >>> export files tmp upload_store >> >>> >> >>> >> >>> >> >>> On Fri, Dec 20, 2013 at 2:20 PM, Dannon Baker >> >>> wrote: >> >>> > Does /mnt/galaxy exist, and does it have all of the expected galaxy >> >>> > components? /mnt/galaxyData might exist, but it should be either >> >>> > empty >> >>> > or a >> >>> > symlink to /mnt/galaxy if I remember correctly. >> >>> > >> >>> > If you're launching your cluster from usegalaxy.org/cloudlaunch, you >> >>> > should >> >>> > always be using the latest stuff. >> >>> > >> >>> > >> >>> > On Fri, Dec 20, 2013 at 2:13 PM, greg wrote: >> >>> >> >> >>> >> Thanks. I was wrong before. I actually do see a /mnt/galaxyData. >> >>> >> >> >>> >> Should I not being seeing that? Am I not on cloudman 2.0? >> >>> >> >> >>> >> -Greg >> >>> >> >> >>> >> On Fri, Dec 20, 2013 at 1:57 PM, Dannon Baker >> >>> >> >> >>> >> wrote: >> >>> >> > With the Cloudman 2.0 release, the galaxyData and galaxyTools >> >>> >> > volumes >> >>> >> > have >> >>> >> > been merged to a single 'galaxy' volume. /mnt/galaxy is now your >> >>> >> > single >> >>> >> > persistent (by default, at least) volume, so, if you install your >> >>> >> > tool >> >>> >> > to >> >>> >> > here and share everything should work as expected. >> >>> >> > >> >>> >> > -Dannon >> >>> >> > >> >>> >> > >> >>> >> > On Fri, Dec 20, 2013 at 1:53 PM, greg >> >>> >> > wrote: >> >>> >> >> >> >>> >> >> Hi guys, >> >>> >> >> >> >>> >> >> I just launched an instance from >> >>> >> >> https://usegalaxy.org/cloudlaunch >> >>> >> >> and >> >>> >> >> chose "data cluster" when prompted. >> >>> >> >> >> >>> >> >> Everything seems to have gone ok, but when I ssh in, I don't see >> >>> >> >> /mnt/galaxyData >> >>> >> >> >> >>> >> >> >> >>> >> >> Background: >> >>> >> >> >> >>> >> >> Basically we have a bioinformatics tool that needs SGE to run. >> >>> >> >> So I >> >>> >> >> want to install it on a galaxy cloud instance and then provide >> >>> >> >> the >> >>> >> >> share string to other researchers. >> >>> >> >> >> >>> >> >> I did this successfully a year or two ago by installing it to >> >>> >> >> /mnt/galaxyData. >> >>> >> >> >> >>> >> >> Thanks, >> >>> >> >> >> >>> >> >> Greg >> >>> >> >> ___ >> >>> >> >> Please keep all replies on the list by using "reply all" >> >>> >> >> in your mail client. To manage your subscriptions to this >> >>> >> >> and other Galaxy lists, please use the interface at: >> >>> >> >> http://lists.bx.psu.edu/ >> >>> >> >> >> >>> >> >> To search Galaxy mailing lists use the unified search at: >> >>> >> >> http://galaxyproject.org/search/mailinglists/ >> >>> >> > >> >>> >> > >> >>> > >> >>> > >> >> >> >> > > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Cloud Launch - Where is /mnt/galaxyData
Hey Greg, Sorry about the delay on this over the holidays. I see what you're working with now. If you install your customizations in a portable manner in /mnt/galaxyData that should be safe and we'll make sure to provide a smooth migration path going forward should that change. Only 'galaxy' type clusters will have /mnt/galaxy and data only clusters should continue to work just fine with /mnt/galaxyData. -Dannon On Mon, Dec 30, 2013 at 1:33 PM, greg wrote: > Just following up on this. So it's ok to do all of my customizations > in /mnt/galaxyData? > > Or am I doing something wrong, and I need to figure out how to boot up > into a version that has /mnt/galaxy? > > Thanks again, > > Greg > > On Fri, Dec 20, 2013 at 2:49 PM, greg wrote: > > Yes, I just launched it a few hours ago. > > > > I just went here and filled out the form: > > https://usegalaxy.org/cloudlaunch > > > > I chose "data cluster" when prompted and enter 5GB. > > > > > > On Fri, Dec 20, 2013 at 2:48 PM, Dannon Baker > wrote: > >> And is this a new instance you've just launched? If so, how'd you > launch > >> it? > >> > >> > >> On Fri, Dec 20, 2013 at 2:37 PM, greg wrote: > >>> > >>> Here's what I'm seeing: > >>> > >>> ubuntu@ip-10-182-195-79:/$ ls / > >>> bin boot dev etc export home initrd.img lib lib64 lost+found > >>> media mnt opt proc root run sbin selinux srv sys tmp usr > >>> var vmlinuz > >>> ubuntu@ip-10-182-195-79:/$ ls mnt > >>> cm galaxyData lost+found transient_nfs > >>> ubuntu@ip-10-182-195-79:/$ ls /mnt/galaxyData/ > >>> export files tmp upload_store > >>> > >>> > >>> > >>> On Fri, Dec 20, 2013 at 2:20 PM, Dannon Baker > >>> wrote: > >>> > Does /mnt/galaxy exist, and does it have all of the expected galaxy > >>> > components? /mnt/galaxyData might exist, but it should be either > empty > >>> > or a > >>> > symlink to /mnt/galaxy if I remember correctly. > >>> > > >>> > If you're launching your cluster from usegalaxy.org/cloudlaunch, you > >>> > should > >>> > always be using the latest stuff. > >>> > > >>> > > >>> > On Fri, Dec 20, 2013 at 2:13 PM, greg wrote: > >>> >> > >>> >> Thanks. I was wrong before. I actually do see a /mnt/galaxyData. > >>> >> > >>> >> Should I not being seeing that? Am I not on cloudman 2.0? > >>> >> > >>> >> -Greg > >>> >> > >>> >> On Fri, Dec 20, 2013 at 1:57 PM, Dannon Baker < > dannon.ba...@gmail.com> > >>> >> wrote: > >>> >> > With the Cloudman 2.0 release, the galaxyData and galaxyTools > volumes > >>> >> > have > >>> >> > been merged to a single 'galaxy' volume. /mnt/galaxy is now your > >>> >> > single > >>> >> > persistent (by default, at least) volume, so, if you install your > >>> >> > tool > >>> >> > to > >>> >> > here and share everything should work as expected. > >>> >> > > >>> >> > -Dannon > >>> >> > > >>> >> > > >>> >> > On Fri, Dec 20, 2013 at 1:53 PM, greg > wrote: > >>> >> >> > >>> >> >> Hi guys, > >>> >> >> > >>> >> >> I just launched an instance from > https://usegalaxy.org/cloudlaunch > >>> >> >> and > >>> >> >> chose "data cluster" when prompted. > >>> >> >> > >>> >> >> Everything seems to have gone ok, but when I ssh in, I don't see > >>> >> >> /mnt/galaxyData > >>> >> >> > >>> >> >> > >>> >> >> Background: > >>> >> >> > >>> >> >> Basically we have a bioinformatics tool that needs SGE to run. > So I > >>> >> >> want to install it on a galaxy cloud instance and then provide > the > >>> >> >> share string to other researchers. > >>> >> >> > >>> >> >> I did this successfully a year or two ago by installing it to > >>> >> >> /mnt/galaxyData. > >>> >> >> > >>> >> >> Thanks, > >>> >> >> > >>> >> >> Greg > >>> >> >> ___ > >>> >> >> Please keep all replies on the list by using "reply all" > >>> >> >> in your mail client. To manage your subscriptions to this > >>> >> >> and other Galaxy lists, please use the interface at: > >>> >> >> http://lists.bx.psu.edu/ > >>> >> >> > >>> >> >> To search Galaxy mailing lists use the unified search at: > >>> >> >> http://galaxyproject.org/search/mailinglists/ > >>> >> > > >>> >> > > >>> > > >>> > > >> > >> > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Cloud Launch - Where is /mnt/galaxyData
Just following up on this. So it's ok to do all of my customizations in /mnt/galaxyData? Or am I doing something wrong, and I need to figure out how to boot up into a version that has /mnt/galaxy? Thanks again, Greg On Fri, Dec 20, 2013 at 2:49 PM, greg wrote: > Yes, I just launched it a few hours ago. > > I just went here and filled out the form: > https://usegalaxy.org/cloudlaunch > > I chose "data cluster" when prompted and enter 5GB. > > > On Fri, Dec 20, 2013 at 2:48 PM, Dannon Baker wrote: >> And is this a new instance you've just launched? If so, how'd you launch >> it? >> >> >> On Fri, Dec 20, 2013 at 2:37 PM, greg wrote: >>> >>> Here's what I'm seeing: >>> >>> ubuntu@ip-10-182-195-79:/$ ls / >>> bin boot dev etc export home initrd.img lib lib64 lost+found >>> media mnt opt proc root run sbin selinux srv sys tmp usr >>> var vmlinuz >>> ubuntu@ip-10-182-195-79:/$ ls mnt >>> cm galaxyData lost+found transient_nfs >>> ubuntu@ip-10-182-195-79:/$ ls /mnt/galaxyData/ >>> export files tmp upload_store >>> >>> >>> >>> On Fri, Dec 20, 2013 at 2:20 PM, Dannon Baker >>> wrote: >>> > Does /mnt/galaxy exist, and does it have all of the expected galaxy >>> > components? /mnt/galaxyData might exist, but it should be either empty >>> > or a >>> > symlink to /mnt/galaxy if I remember correctly. >>> > >>> > If you're launching your cluster from usegalaxy.org/cloudlaunch, you >>> > should >>> > always be using the latest stuff. >>> > >>> > >>> > On Fri, Dec 20, 2013 at 2:13 PM, greg wrote: >>> >> >>> >> Thanks. I was wrong before. I actually do see a /mnt/galaxyData. >>> >> >>> >> Should I not being seeing that? Am I not on cloudman 2.0? >>> >> >>> >> -Greg >>> >> >>> >> On Fri, Dec 20, 2013 at 1:57 PM, Dannon Baker >>> >> wrote: >>> >> > With the Cloudman 2.0 release, the galaxyData and galaxyTools volumes >>> >> > have >>> >> > been merged to a single 'galaxy' volume. /mnt/galaxy is now your >>> >> > single >>> >> > persistent (by default, at least) volume, so, if you install your >>> >> > tool >>> >> > to >>> >> > here and share everything should work as expected. >>> >> > >>> >> > -Dannon >>> >> > >>> >> > >>> >> > On Fri, Dec 20, 2013 at 1:53 PM, greg wrote: >>> >> >> >>> >> >> Hi guys, >>> >> >> >>> >> >> I just launched an instance from https://usegalaxy.org/cloudlaunch >>> >> >> and >>> >> >> chose "data cluster" when prompted. >>> >> >> >>> >> >> Everything seems to have gone ok, but when I ssh in, I don't see >>> >> >> /mnt/galaxyData >>> >> >> >>> >> >> >>> >> >> Background: >>> >> >> >>> >> >> Basically we have a bioinformatics tool that needs SGE to run. So I >>> >> >> want to install it on a galaxy cloud instance and then provide the >>> >> >> share string to other researchers. >>> >> >> >>> >> >> I did this successfully a year or two ago by installing it to >>> >> >> /mnt/galaxyData. >>> >> >> >>> >> >> Thanks, >>> >> >> >>> >> >> Greg >>> >> >> ___ >>> >> >> Please keep all replies on the list by using "reply all" >>> >> >> in your mail client. To manage your subscriptions to this >>> >> >> and other Galaxy lists, please use the interface at: >>> >> >> http://lists.bx.psu.edu/ >>> >> >> >>> >> >> To search Galaxy mailing lists use the unified search at: >>> >> >> http://galaxyproject.org/search/mailinglists/ >>> >> > >>> >> > >>> > >>> > >> >> ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Cloud Launch - Where is /mnt/galaxyData
Yes, I just launched it a few hours ago. I just went here and filled out the form: https://usegalaxy.org/cloudlaunch I chose "data cluster" when prompted and enter 5GB. On Fri, Dec 20, 2013 at 2:48 PM, Dannon Baker wrote: > And is this a new instance you've just launched? If so, how'd you launch > it? > > > On Fri, Dec 20, 2013 at 2:37 PM, greg wrote: >> >> Here's what I'm seeing: >> >> ubuntu@ip-10-182-195-79:/$ ls / >> bin boot dev etc export home initrd.img lib lib64 lost+found >> media mnt opt proc root run sbin selinux srv sys tmp usr >> var vmlinuz >> ubuntu@ip-10-182-195-79:/$ ls mnt >> cm galaxyData lost+found transient_nfs >> ubuntu@ip-10-182-195-79:/$ ls /mnt/galaxyData/ >> export files tmp upload_store >> >> >> >> On Fri, Dec 20, 2013 at 2:20 PM, Dannon Baker >> wrote: >> > Does /mnt/galaxy exist, and does it have all of the expected galaxy >> > components? /mnt/galaxyData might exist, but it should be either empty >> > or a >> > symlink to /mnt/galaxy if I remember correctly. >> > >> > If you're launching your cluster from usegalaxy.org/cloudlaunch, you >> > should >> > always be using the latest stuff. >> > >> > >> > On Fri, Dec 20, 2013 at 2:13 PM, greg wrote: >> >> >> >> Thanks. I was wrong before. I actually do see a /mnt/galaxyData. >> >> >> >> Should I not being seeing that? Am I not on cloudman 2.0? >> >> >> >> -Greg >> >> >> >> On Fri, Dec 20, 2013 at 1:57 PM, Dannon Baker >> >> wrote: >> >> > With the Cloudman 2.0 release, the galaxyData and galaxyTools volumes >> >> > have >> >> > been merged to a single 'galaxy' volume. /mnt/galaxy is now your >> >> > single >> >> > persistent (by default, at least) volume, so, if you install your >> >> > tool >> >> > to >> >> > here and share everything should work as expected. >> >> > >> >> > -Dannon >> >> > >> >> > >> >> > On Fri, Dec 20, 2013 at 1:53 PM, greg wrote: >> >> >> >> >> >> Hi guys, >> >> >> >> >> >> I just launched an instance from https://usegalaxy.org/cloudlaunch >> >> >> and >> >> >> chose "data cluster" when prompted. >> >> >> >> >> >> Everything seems to have gone ok, but when I ssh in, I don't see >> >> >> /mnt/galaxyData >> >> >> >> >> >> >> >> >> Background: >> >> >> >> >> >> Basically we have a bioinformatics tool that needs SGE to run. So I >> >> >> want to install it on a galaxy cloud instance and then provide the >> >> >> share string to other researchers. >> >> >> >> >> >> I did this successfully a year or two ago by installing it to >> >> >> /mnt/galaxyData. >> >> >> >> >> >> Thanks, >> >> >> >> >> >> Greg >> >> >> ___ >> >> >> Please keep all replies on the list by using "reply all" >> >> >> in your mail client. To manage your subscriptions to this >> >> >> and other Galaxy lists, please use the interface at: >> >> >> http://lists.bx.psu.edu/ >> >> >> >> >> >> To search Galaxy mailing lists use the unified search at: >> >> >> http://galaxyproject.org/search/mailinglists/ >> >> > >> >> > >> > >> > > > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Cloud Launch - Where is /mnt/galaxyData
And is this a new instance you've just launched? If so, how'd you launch it? On Fri, Dec 20, 2013 at 2:37 PM, greg wrote: > Here's what I'm seeing: > > ubuntu@ip-10-182-195-79:/$ ls / > bin boot dev etc export home initrd.img lib lib64 lost+found > media mnt opt proc root run sbin selinux srv sys tmp usr > var vmlinuz > ubuntu@ip-10-182-195-79:/$ ls mnt > cm galaxyData lost+found transient_nfs > ubuntu@ip-10-182-195-79:/$ ls /mnt/galaxyData/ > export files tmp upload_store > > > > On Fri, Dec 20, 2013 at 2:20 PM, Dannon Baker > wrote: > > Does /mnt/galaxy exist, and does it have all of the expected galaxy > > components? /mnt/galaxyData might exist, but it should be either empty > or a > > symlink to /mnt/galaxy if I remember correctly. > > > > If you're launching your cluster from usegalaxy.org/cloudlaunch, you > should > > always be using the latest stuff. > > > > > > On Fri, Dec 20, 2013 at 2:13 PM, greg wrote: > >> > >> Thanks. I was wrong before. I actually do see a /mnt/galaxyData. > >> > >> Should I not being seeing that? Am I not on cloudman 2.0? > >> > >> -Greg > >> > >> On Fri, Dec 20, 2013 at 1:57 PM, Dannon Baker > >> wrote: > >> > With the Cloudman 2.0 release, the galaxyData and galaxyTools volumes > >> > have > >> > been merged to a single 'galaxy' volume. /mnt/galaxy is now your > single > >> > persistent (by default, at least) volume, so, if you install your tool > >> > to > >> > here and share everything should work as expected. > >> > > >> > -Dannon > >> > > >> > > >> > On Fri, Dec 20, 2013 at 1:53 PM, greg wrote: > >> >> > >> >> Hi guys, > >> >> > >> >> I just launched an instance from https://usegalaxy.org/cloudlaunchand > >> >> chose "data cluster" when prompted. > >> >> > >> >> Everything seems to have gone ok, but when I ssh in, I don't see > >> >> /mnt/galaxyData > >> >> > >> >> > >> >> Background: > >> >> > >> >> Basically we have a bioinformatics tool that needs SGE to run. So I > >> >> want to install it on a galaxy cloud instance and then provide the > >> >> share string to other researchers. > >> >> > >> >> I did this successfully a year or two ago by installing it to > >> >> /mnt/galaxyData. > >> >> > >> >> Thanks, > >> >> > >> >> Greg > >> >> ___ > >> >> Please keep all replies on the list by using "reply all" > >> >> in your mail client. To manage your subscriptions to this > >> >> and other Galaxy lists, please use the interface at: > >> >> http://lists.bx.psu.edu/ > >> >> > >> >> To search Galaxy mailing lists use the unified search at: > >> >> http://galaxyproject.org/search/mailinglists/ > >> > > >> > > > > > > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Cloud Launch - Where is /mnt/galaxyData
Here's what I'm seeing: ubuntu@ip-10-182-195-79:/$ ls / bin boot dev etc export home initrd.img lib lib64 lost+found media mnt opt proc root run sbin selinux srv sys tmp usr var vmlinuz ubuntu@ip-10-182-195-79:/$ ls mnt cm galaxyData lost+found transient_nfs ubuntu@ip-10-182-195-79:/$ ls /mnt/galaxyData/ export files tmp upload_store On Fri, Dec 20, 2013 at 2:20 PM, Dannon Baker wrote: > Does /mnt/galaxy exist, and does it have all of the expected galaxy > components? /mnt/galaxyData might exist, but it should be either empty or a > symlink to /mnt/galaxy if I remember correctly. > > If you're launching your cluster from usegalaxy.org/cloudlaunch, you should > always be using the latest stuff. > > > On Fri, Dec 20, 2013 at 2:13 PM, greg wrote: >> >> Thanks. I was wrong before. I actually do see a /mnt/galaxyData. >> >> Should I not being seeing that? Am I not on cloudman 2.0? >> >> -Greg >> >> On Fri, Dec 20, 2013 at 1:57 PM, Dannon Baker >> wrote: >> > With the Cloudman 2.0 release, the galaxyData and galaxyTools volumes >> > have >> > been merged to a single 'galaxy' volume. /mnt/galaxy is now your single >> > persistent (by default, at least) volume, so, if you install your tool >> > to >> > here and share everything should work as expected. >> > >> > -Dannon >> > >> > >> > On Fri, Dec 20, 2013 at 1:53 PM, greg wrote: >> >> >> >> Hi guys, >> >> >> >> I just launched an instance from https://usegalaxy.org/cloudlaunch and >> >> chose "data cluster" when prompted. >> >> >> >> Everything seems to have gone ok, but when I ssh in, I don't see >> >> /mnt/galaxyData >> >> >> >> >> >> Background: >> >> >> >> Basically we have a bioinformatics tool that needs SGE to run. So I >> >> want to install it on a galaxy cloud instance and then provide the >> >> share string to other researchers. >> >> >> >> I did this successfully a year or two ago by installing it to >> >> /mnt/galaxyData. >> >> >> >> Thanks, >> >> >> >> Greg >> >> ___ >> >> Please keep all replies on the list by using "reply all" >> >> in your mail client. To manage your subscriptions to this >> >> and other Galaxy lists, please use the interface at: >> >> http://lists.bx.psu.edu/ >> >> >> >> To search Galaxy mailing lists use the unified search at: >> >> http://galaxyproject.org/search/mailinglists/ >> > >> > > > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Cloud Launch - Where is /mnt/galaxyData
Does /mnt/galaxy exist, and does it have all of the expected galaxy components? /mnt/galaxyData might exist, but it should be either empty or a symlink to /mnt/galaxy if I remember correctly. If you're launching your cluster from usegalaxy.org/cloudlaunch, you should always be using the latest stuff. On Fri, Dec 20, 2013 at 2:13 PM, greg wrote: > Thanks. I was wrong before. I actually do see a /mnt/galaxyData. > > Should I not being seeing that? Am I not on cloudman 2.0? > > -Greg > > On Fri, Dec 20, 2013 at 1:57 PM, Dannon Baker > wrote: > > With the Cloudman 2.0 release, the galaxyData and galaxyTools volumes > have > > been merged to a single 'galaxy' volume. /mnt/galaxy is now your single > > persistent (by default, at least) volume, so, if you install your tool to > > here and share everything should work as expected. > > > > -Dannon > > > > > > On Fri, Dec 20, 2013 at 1:53 PM, greg wrote: > >> > >> Hi guys, > >> > >> I just launched an instance from https://usegalaxy.org/cloudlaunch and > >> chose "data cluster" when prompted. > >> > >> Everything seems to have gone ok, but when I ssh in, I don't see > >> /mnt/galaxyData > >> > >> > >> Background: > >> > >> Basically we have a bioinformatics tool that needs SGE to run. So I > >> want to install it on a galaxy cloud instance and then provide the > >> share string to other researchers. > >> > >> I did this successfully a year or two ago by installing it to > >> /mnt/galaxyData. > >> > >> Thanks, > >> > >> Greg > >> ___ > >> Please keep all replies on the list by using "reply all" > >> in your mail client. To manage your subscriptions to this > >> and other Galaxy lists, please use the interface at: > >> http://lists.bx.psu.edu/ > >> > >> To search Galaxy mailing lists use the unified search at: > >> http://galaxyproject.org/search/mailinglists/ > > > > > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Cloud Launch - Where is /mnt/galaxyData
Thanks. I was wrong before. I actually do see a /mnt/galaxyData. Should I not being seeing that? Am I not on cloudman 2.0? -Greg On Fri, Dec 20, 2013 at 1:57 PM, Dannon Baker wrote: > With the Cloudman 2.0 release, the galaxyData and galaxyTools volumes have > been merged to a single 'galaxy' volume. /mnt/galaxy is now your single > persistent (by default, at least) volume, so, if you install your tool to > here and share everything should work as expected. > > -Dannon > > > On Fri, Dec 20, 2013 at 1:53 PM, greg wrote: >> >> Hi guys, >> >> I just launched an instance from https://usegalaxy.org/cloudlaunch and >> chose "data cluster" when prompted. >> >> Everything seems to have gone ok, but when I ssh in, I don't see >> /mnt/galaxyData >> >> >> Background: >> >> Basically we have a bioinformatics tool that needs SGE to run. So I >> want to install it on a galaxy cloud instance and then provide the >> share string to other researchers. >> >> I did this successfully a year or two ago by installing it to >> /mnt/galaxyData. >> >> Thanks, >> >> Greg >> ___ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> http://lists.bx.psu.edu/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ > > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Cloud Launch - Where is /mnt/galaxyData
With the Cloudman 2.0 release, the galaxyData and galaxyTools volumes have been merged to a single 'galaxy' volume. /mnt/galaxy is now your single persistent (by default, at least) volume, so, if you install your tool to here and share everything should work as expected. -Dannon On Fri, Dec 20, 2013 at 1:53 PM, greg wrote: > Hi guys, > > I just launched an instance from https://usegalaxy.org/cloudlaunch and > chose "data cluster" when prompted. > > Everything seems to have gone ok, but when I ssh in, I don't see > /mnt/galaxyData > > > Background: > > Basically we have a bioinformatics tool that needs SGE to run. So I > want to install it on a galaxy cloud instance and then provide the > share string to other researchers. > > I did this successfully a year or two ago by installing it to > /mnt/galaxyData. > > Thanks, > > Greg > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Cloud Launch - Where is /mnt/galaxyData
Hi guys, I just launched an instance from https://usegalaxy.org/cloudlaunch and chose "data cluster" when prompted. Everything seems to have gone ok, but when I ssh in, I don't see /mnt/galaxyData Background: Basically we have a bioinformatics tool that needs SGE to run. So I want to install it on a galaxy cloud instance and then provide the share string to other researchers. I did this successfully a year or two ago by installing it to /mnt/galaxyData. Thanks, Greg ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
