Hi Leandro,
Leandro Hermida wrote, On 04/29/2011 06:17 AM:
> But I have one complication I guess. My tool is already running a Python
> code file to dynamically create a drop-down menu using the dynamic_options
> attribute a la:
>
>
> ...
>
>
> In this function my_options I would need the t
Hi Assaf,
On Thu, Apr 28, 2011 at 7:55 PM, Assaf Gordon wrote:
> Leandro Hermida wrote, On 04/28/2011 08:55 AM:
> > Hi galaxy developers,
> >
> > Just want to double-check, there is no way to import some kind of galaxy
> tool context info into python code you are running for a tool?
>
> Nothing
Leandro Hermida wrote, On 04/28/2011 08:55 AM:
> Hi galaxy developers,
>
> Just want to double-check, there is no way to import some kind of galaxy tool
> context info into python code you are running for a tool?
Nothing is impossible... just depends on how messy you want to get :)
for me, the
Hi galaxy developers,
Just want to double-check, there is no way to import some kind of galaxy
tool context info into python code you are running for a tool?
best,
leandro
On Fri, Apr 15, 2011 at 8:03 PM, Leandro Hermida wrote:
> On Fri, Apr 15, 2011 at 7:27 PM, Peter Cock wrote:
>
>> On Thu,
On Fri, Apr 15, 2011 at 7:27 PM, Peter Cock wrote:
> On Thu, Apr 14, 2011 at 2:56 PM, Leandro Hermida
> wrote:
> > On Thu, Apr 14, 2011 at 3:17 PM, Peter Cock
> > wrote:
> >>
> >> For standard Python tools in Galaxy, I'm using
> >> os.path.split(sys.argv[0])[0]
> >> to get the path, which on ref
On Thu, Apr 14, 2011 at 2:56 PM, Leandro Hermida
wrote:
> On Thu, Apr 14, 2011 at 3:17 PM, Peter Cock
> wrote:
>>
>> For standard Python tools in Galaxy, I'm using
>> os.path.split(sys.argv[0])[0]
>> to get the path, which on reflection probably should be written as
>> os.path.dirname(sys.argv[0]
Hi sorry to ping again, but do any of the Galaxy developers have
advice/recommended approach for the problem in this thread?
On Thu, Apr 14, 2011 at 3:56 PM, Leandro Hermida wrote:
> On Thu, Apr 14, 2011 at 3:17 PM, Peter Cock wrote:
>
>> On Thu, Apr 14, 2011 at 2:08 PM, Leandro Hermida
>> wrot
On Thu, Apr 14, 2011 at 3:17 PM, Peter Cock wrote:
> On Thu, Apr 14, 2011 at 2:08 PM, Leandro Hermida
> wrote:
> > Hi,
> >
> > I have a tool with a tag and in that code
> file
> > I'm trying to get the tool dirpath where that script and the tool XML
> > exist. I've tried:
> >
> > os.path.abspat
On Thu, Apr 14, 2011 at 2:08 PM, Leandro Hermida
wrote:
> Hi,
>
> I have a tool with a tag and in that code file
> I'm trying to get the tool dirpath where that script and the tool XML
> exist. I've tried:
>
> os.path.abspath(os.path.dirname(sys.argv[0]))
> os.path.abspath(os.path.dirname(__file
Hi,
I have a tool with a tag and in that code file
I'm trying to get the tool dirpath where that script and the tool XML
exist. I've tried:
os.path.abspath(os.path.dirname(sys.argv[0]))
os.path.abspath(os.path.dirname(__file__))
And both don't work as expected. Is there a galaxy class I could
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